Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00840 atgatTTCCTCCGTATCTCTTCCTTCCGTTTCTCTCTACGCAACTAACTTCTCCGGCAACACCGTAACACCACCACCGTGCCGTATCAGATCTAAACCTTTTGTAATCTCCGCTAGCGCTACAGCCACCGCTGAACCTCGCTCTACATCATGGActgatcaacaacaacaacaaagaccTTCTTATCTAAACATGAACACAAACTCGATCTGTTCTCCTTCATCACTTTACGAGATCCTTGGTATATCAGCAGGTGCATCGGTTCAAGAAATTAAATCTGCTTACCGACGACTTGCGAGAGTTTGTCATCCCGATGTGGCAGCGATTGACCGGAAAAATTCTTCGGCGGATGATTTTATGAAGATTCATTCTGCTTATTCTACTCTTTCGGATCCAGAAAAACGTGCTAATTATGATCGGAGTCTTTTTCGTCGACAACAACGACCGTTGTCGACGATGATGTCTTCGGGTTACTCTAGCCGGAAATGGGAAACTGATCAGTGTTGGTAG 510 0.4275 MISSVSLPSVSLYATNFSGNTVTPPPCRIRSKPFVISASATATAEPRSTSWTDQQQQQRPSYLNMNTNSICSPSSLYEILGISAGASVQEIKSAYRRLARVCHPDVAAIDRKNSSADDFMKIHSAYSTLSDPEKRANYDRSLFRRQQRPLSTMMSSGYSSRKWETDQCW 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00840 169 SMART dnaj_3 74 134 IPR001623 -
Tsu05g00840 169 PRINTS DnaJ domain signature 77 95 IPR001623 -
Tsu05g00840 169 PRINTS DnaJ domain signature 95 110 IPR001623 -
Tsu05g00840 169 PRINTS DnaJ domain signature 114 134 IPR001623 -
Tsu05g00840 169 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 1 169 - -
Tsu05g00840 169 Gene3D DnaJ domain 61 163 IPR036869 -
Tsu05g00840 169 PANTHER - 1 169 - -
Tsu05g00840 169 ProSiteProfiles dnaJ domain profile. 75 142 IPR001623 -
Tsu05g00840 169 CDD DnaJ 77 131 IPR001623 -
Tsu05g00840 169 ProSitePatterns Nt-dnaJ domain signature. 119 138 IPR018253 -
Tsu05g00840 169 Pfam DnaJ domain 76 139 IPR001623 -
Tsu05g00840 169 SUPERFAMILY Chaperone J-domain 44 138 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00840 Tsu-Chr5 7202677 7203869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00840 65 139 C2H2 Transcription Factor Family AT1G74250 41.772 5.33e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00840 - - gmx:100800959 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00840 05 7202677 7203869 Tsu05g00840 05 7202677 7203869 ECH
Tsu05g00840 05 7202677 7203869 Tsu04g03516 04 44303077 44303900 ECH