Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00838 atGGGTATATGTTTTTCTTCTACAAAGGTTGTTAGTGGTTCTAATAGCAACACAACAAACAATGAAAACCGTAAACGTaattcaacatcaacaacaaagaCAGAAAATGCTCCGGTGAATACTACAGCGGCGACGGCGTCGGCGTCGACGACAAAGAAACGTCAAGTACCTAGCTCTAATCAAAGACGTAGAGGCTCAGAAGAAACCCAAAAGAAAACCCATCAATCAAGACATAAAGATAAAGTTAGTTCACGTGTTCCTTGTGGAAAAAGAACGGATTTTGGTTATGAGAAAGATTTTGATAAGAGATTTTCTCTTGGAAAATTGTTGGGGCATGGACAATTTGGTTATACTTATGTTGGTATTGATAAATCTAGTGGAGATCGTGTTGCTGTTAAAAGACTCGAGAAAGCTAAGATGGTTCTCCCTATAGCTGTTGAAGATGTAAAGAGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTATAATGCTTTTGAGGATGACTCATATGTGTACATAGTTATGGAGTTGTGCGAAGGTGGAGAACTACTAGACCGGATATTGGGCAAGAAGGATAGCCGTTATACTGAAAAAGATGCTGCAGTGGTTGTAAGGCAGATGCTGAAGGTTGCAGCTCAGTGTCATTTACATGGCTTGGTACATCGTGACATGAAGCCAGAGAATTTTCTattcaaatcaaacaaagaCGATTCAGCTTTAAAGGCTACTGATTTTGGTTTGTCCGATTTCATAAAACCTGGAAAGAGATTTCAAGATATCGTTGGAAGTGCTTACTACGTTGCACCAGAAGTGTTGAAACGGAAGTCGGGCCCTGAATCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGACCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCCGATTTCCGACGGAAACCATGGCCAACCATAAGTAATGCTGCAAAAGATTTTGTGAGGAAATTATTGGTAAAAGATCCTCGGGCAAGATTGACTGCTGCTCAGGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAGGCATCCGAGATTCCGGTTGATATATCTGTCTTGAACAACATGAGACAGTTTGTGAAGTATAGTCGATTGAAACAATTTGCATTGAGGGCATTGGCTAGCACACTTAACGAAGGTGAGTTTTCTGATCTAAAGGATCAATTTGATGCAATAGATGTGGACAAAAATGGCGCTATTAGTCTTGAAGAAATGAGACAGGCTCTTGCTAAAGATCTCCCGTGGAAGTTGAAAGAATCTCGTGTATTAGAGATATTGCAAGCGGTTAGTACCTAA 1377 0.3965 MGICFSSTKVVSGSNSNTTNNENRKRNSTSTTKTENAPVNTTAATASASTTKKRQVPSSNQRRRGSEETQKKTHQSRHKDKVSSRVPCGKRTDFGYEKDFDKRFSLGKLLGHGQFGYTYVGIDKSSGDRVAVKRLEKAKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILGKKDSRYTEKDAAVVVRQMLKVAAQCHLHGLVHRDMKPENFLFKSNKDDSALKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVRKLLVKDPRARLTAAQALSHPWVREGGEASEIPVDISVLNNMRQFVKYSRLKQFALRALASTLNEGEFSDLKDQFDAIDVDKNGAISLEEMRQALAKDLPWKLKESRVLEILQAVST 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00838 458 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Tsu05g00838 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Tsu05g00838 458 ProSiteProfiles Protein kinase domain profile. 104 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00838 458 SMART serkin_6 104 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00838 458 Gene3D Transferase(Phosphotransferase) domain 1 190 371 - -
Tsu05g00838 458 MobiDBLite consensus disorder prediction 60 88 - -
Tsu05g00838 458 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 457 - -
Tsu05g00838 458 CDD STKc_CAMK 103 363 - -
Tsu05g00838 458 MobiDBLite consensus disorder prediction 1 88 - -
Tsu05g00838 458 Gene3D - 380 456 - -
Tsu05g00838 458 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 31 457 - -
Tsu05g00838 458 SMART efh_1 411 439 IPR002048 GO:0005509
Tsu05g00838 458 MobiDBLite consensus disorder prediction 1 56 - -
Tsu05g00838 458 Gene3D - 390 404 - -
Tsu05g00838 458 Pfam Protein kinase domain 106 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00838 458 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Tsu05g00838 458 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Tsu05g00838 458 SUPERFAMILY EF-hand 390 452 IPR011992 -
Tsu05g00838 458 SUPERFAMILY Protein kinase-like (PK-like) 91 393 IPR011009 -
Tsu05g00838 458 Gene3D Phosphorylase Kinase; domain 1 97 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00838 Tsu-Chr5 7168890 7174357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00838 1 458 EF-hand Containing Proteins AT2G17890 71.489 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu05g00838 Pkinase 6.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00838 K13412 - gmx:100817249 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00838 05 7168890 7174357 Tsu05g00838 05 7168890 7174357 ECH