Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00833 ATGGAACAACCtcaacaaaaccaacaaaatgAAGAAGCAGGTAGTGGAAAAGGGGGGCATATGAGCAGACAAAGTAGTACAAGATGGACACCAACAACAGATCAAATAAGAATATTGAAAGATCTTTATTACAACAATGGAATAAGATCACCAAGTGCAGAACAAATTCAGAGGATCTCTGCTAGATTAAGACAATATGGTAAgattgaaggaaaaaatgtcTTTTATTGGTTTCAAAATCATAAAGCTAGAGAAAGACAGAAGAAAAGATTCACTTCTGATGTTAACAATGTTGTTCTTCCTAACATTCAAAGATCAACACCAAATAACAACAATGGAATTATTTCTTCTGCTAATTGGAAATTACCTGATCATGATCATCAACAACAGCCTATTGCAACATATCATTCTtctgTCCTTTTTATGTGTATAGGGCTTTCTACTGCTTCATGTTCTTCTGCTGAAATGGTTACTGTAGGCCAGATTGGAAATTATGGATATGGAACTGTGCCAATGGAGAAAAGTTTTAGGgaGTGCACAATATCAGCTGGATGTAGTAGTAGTAAAGTTGGAAGCACCATGAACAATCACTTAGGATGGATTGGTCATCATGTTGATCCATATTCTTCAACTAATTATGCAAatttatttggaaaaataaaaccaaatgaAGAAatcatggaagaagaagaagaacaagaacatgaaattgaaactcTTCCTTTATTTCCTATGCATGGTGAAGAAATTAATCATGGTGGTTATTGTAATCTCAAATCAAATTCATCTAACTATGCTGCTGCTACTGCTGCTGCTTATGGTTGGTATCAAGGTGAAAATCATGGTTTCATCAATGGTTCTTTGGAACTTAGCCTCAACTCTTACACTCGTAGATCACCAGATTATGCTAATTAA 915 0.3104 MEQPQQNQQNEEAGSGKGGHMSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVNNVVLPNIQRSTPNNNNGIISSANWKLPDHDHQQQPIATYHSSVLFMCIGLSTASCSSAEMVTVGQIGNYGYGTVPMEKSFRECTISAGCSSSKVGSTMNNHLGWIGHHVDPYSSTNYANLFGKIKPNEEIMEEEEEQEHEIETLPLFPMHGEEINHGGYCNLKSNSSNYAAATAAAYGWYQGENHGFINGSLELSLNSYTRRSPDYAN 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00833 304 PANTHER PROTEIN WUSCHEL 1 296 - -
Tsu05g00833 304 CDD homeodomain 27 89 IPR001356 GO:0003677
Tsu05g00833 304 Pfam Homeodomain 26 87 IPR001356 GO:0003677
Tsu05g00833 304 Gene3D - 18 87 - -
Tsu05g00833 304 SUPERFAMILY Homeodomain-like 19 93 IPR009057 -
Tsu05g00833 304 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 296 IPR044555 GO:0003700|GO:0099402
Tsu05g00833 304 MobiDBLite consensus disorder prediction 1 32 - -
Tsu05g00833 304 SMART HOX_1 24 92 IPR001356 GO:0003677
Tsu05g00833 304 ProSiteProfiles 'Homeobox' domain profile. 22 88 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00833 Tsu-Chr5 7101576 7103074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00833 23 254 Wox Gene Family AT2G17950 41.473 2.34e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tsu05g00833 Homeodomain 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00833 - - vra:106776674 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00833 05 7101576 7103074 Tsu05g00833 05 7101576 7103074 ECH