Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00826 ATGGGCataaaaaaatccaacaaaCAACAATCTGAAGTTATCAAGCAAATTCTCAAAAGATGTTCAAGTTTTGGTAAAAAGCAAAGTTACAATCAAGAGGGTCTTCCTGAGGATGTACCAAGAGGTCATTTTGCAGTTTATGTTGGAGAGAATAGGACTAGATATATTGTCCCAATTTCTTGGTTGGAACATCCTCAATTTCAAAATCTTCTACAAAGAGCTGCAGAGGAATTTGGTTTCAATCATGATATGGGACTTACTATCCCTTGTGATGAAGATGTTTTTGAGTCCTTAATTTCATTGATGAGATAA 312 0.3365 MGIKKSNKQQSEVIKQILKRCSSFGKKQSYNQEGLPEDVPRGHFAVYVGENRTRYIVPISWLEHPQFQNLLQRAAEEFGFNHDMGLTIPCDEDVFESLISLMR 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00826 103 Pfam Auxin responsive protein 26 101 IPR003676 GO:0009733
Tsu05g00826 103 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 103 - -
Tsu05g00826 103 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 103 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00826 Tsu-Chr5 7046510 7047186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00826 5 102 Calmodulin-binding Proteins AT4G34750 46.465 2.01e-21 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00826 K14488 - gmx:100798840 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00826 05 7046510 7047186 Tsu04g03498 04 44173541 44174374 ECH
Tsu07g00274 07 2097593 2098397 Tsu05g00826 05 7046510 7047186 ECH
Tsu05g00826 05 7046510 7047186 Tsu05g00826 05 7046510 7047186 ECH
Tsu02g02514 02 26027776 26029528 Tsu05g00826 05 7046510 7047186 ECH