Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00820 ATGGGTAGGGTTATCAGGGCACAACATAAAGGAGCAGGTTCCGTTTTCAAATCCCACACACATCACCGTAAAGGACCAGCACGTTTCCGAAGTCTCGATTTCGAAGAAAGAAACGGTTACGTTAAAGGAGTAGTAGTAACAGACATTATTCATGATCCTGGTCGTGGTGCACCACTTGCTAAGGTTACTTTCAGACATCCATTTGGGTATAAGAAACAGAATGAACTATTTGTTGTTGCTGAATGA 246 0.4228 MGRVIRAQHKGAGSVFKSHTHHRKGPARFRSLDFEERNGYVKGVVVTDIIHDPGRGAPLAKVTFRHPFGYKKQNELFVVAE 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00820 81 MobiDBLite consensus disorder prediction 1 24 - -
Tsu05g00820 81 Pfam Ribosomal Proteins L2, RNA binding domain 13 66 IPR022666 GO:0003735|GO:0005840|GO:0006412
Tsu05g00820 81 SMART Ribosomal_L2_2 11 80 IPR002171 GO:0003735|GO:0005840|GO:0006412
Tsu05g00820 81 SUPERFAMILY Nucleic acid-binding proteins 1 67 IPR012340 -
Tsu05g00820 81 PANTHER 60S RIBOSOMAL PROTEIN L8-1 1 81 - -
Tsu05g00820 81 PANTHER RIBOSOMAL PROTEIN L2 1 81 IPR002171 GO:0003735|GO:0005840|GO:0006412
Tsu05g00820 81 Gene3D - 1 81 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00820 Tsu-Chr5 7006291 7006536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00820 1 81 Cytoplasmic Ribosomal Protein Gene Family AT2G18020 86.420 2.62e-44 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00820 K02938 - mnt:21409345 150.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00820 05 7006291 7006536 Tsu05g00820 05 7006291 7006536 ECH