Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00816 ATGTCTGCTATTGGAGAAGTAGTTGATGCTGTTGTTCTCGCCGTGGAACAACCACCGCAGGCGGTGAAAGCGGCGGAGGAACCTAAACCTGTGAAGGAAAAGAAACCAAAAGCATTAAAAGAGAAGAAACCTAAACAGACTAAAACAGCTTCACATCCTCCTTATTTTCAGATGATTAAGGAGGCTTTGTTGGCTCTGAAGGAGAAAAACGGTTCAAGTCCCTATGCTATAGCCAAATTCATGGAGGAGAAGTTTAAGTCGGTGCTTCCGGCGAATTTTAAGAAGATGCTGAGTTTGcagctgaagaatcaagctgCGAGAGGGAAGCTGGTGAAGATCAAGGCTTCGTATAAGCTATCTGAAGCCGAGAAGccgaagaaggagaagaagagcaCGAAGGGTGACGTGGCAGAGAAGAAACAGAGCCAGAAGAGGAAGAGAAATGTTACGGTTGGTGGTACGAAGAGTAAGAAAAATGAGGCggttaagaagaagaagagtaagAAGGTTTCTGGGCCTGCGAAGCCCAAACAGCCCAAGTCCATTAAGTCGAAGAATAATAAGAGGGCTAGAAAAGCTACTGTTGCTCATGCTTGA 597 0.407 MSAIGEVVDAVVLAVEQPPQAVKAAEEPKPVKEKKPKALKEKKPKQTKTASHPPYFQMIKEALLALKEKNGSSPYAIAKFMEEKFKSVLPANFKKMLSLQLKNQAARGKLVKIKASYKLSEAEKPKKEKKSTKGDVAEKKQSQKRKRNVTVGGTKSKKNEAVKKKKSKKVSGPAKPKQPKSIKSKNNKRARKATVAHA 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00816 198 MobiDBLite consensus disorder prediction 115 145 - -
Tsu05g00816 198 PANTHER HISTONE H1 8 194 - -
Tsu05g00816 198 MobiDBLite consensus disorder prediction 19 54 - -
Tsu05g00816 198 Gene3D - 46 134 IPR036388 -
Tsu05g00816 198 CDD H15 49 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu05g00816 198 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 51 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu05g00816 198 MobiDBLite consensus disorder prediction 115 198 - -
Tsu05g00816 198 PANTHER HISTONE H1 8 194 - -
Tsu05g00816 198 MobiDBLite consensus disorder prediction 159 173 - -
Tsu05g00816 198 SUPERFAMILY "Winged helix" DNA-binding domain 48 132 IPR036390 -
Tsu05g00816 198 SMART h15plus2 49 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu05g00816 198 MobiDBLite consensus disorder prediction 181 198 - -
Tsu05g00816 198 PRINTS Histone H5 signature 38 59 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu05g00816 198 PRINTS Histone H5 signature 65 82 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu05g00816 198 PRINTS Histone H5 signature 168 185 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu05g00816 198 Pfam linker histone H1 and H5 family 52 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00816 Tsu-Chr5 6988388 6989408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00816 49 119 Single Myb Histone (SMH) Gene Family AT1G72740 40.845 1.62e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00816 K11275 - gmx:100500169 187.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00816 05 6988388 6989408 Tsu05g00816 05 6988388 6989408 ECH