Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00813 ATGCATACTTTTCTCTTCATATTGTTACTCTGCGCACCAATCTTATCCTACGCCGATAACAGTAACGCAACCGTAACCGTAACTGTAACAGAGATCCAAGCCTTAACGTCGTTTAAACTAAACCTCCATGATCCACTCGGAGCACTCGACGGTTGGGATCCATCTTCACCGGAAGCACCATGTGACTGGCGCGGTGTTGCTTGTAACAATGACCGAGTCACTGAGCTTCGTTTGCCACGTCTTCAACTCGGTGGTAAACTCAGTGAACGTCTTTCAGAGTTACGCATGCTAAGGAAATTGAGTCTTCGTTCGAATTTCTTCAACGGAACGATTCCGAGAGCGTTGATGAAATGCAAGTTACTTCGGTTTTTGTTCTTGCAGGATAATGTATTTTCCGGTGAGATTCCGCCGGAGATCGGAAACCTTACCGGTCTTAAGATTCTCAATGTTGCTCAGAATAATCTATCTGGAACTGTTCCGGTAGAGCTTCCGATTGGTTTGAAGTATCTTGACTTATCGTCGAATGCTTTTTCCGGTGAGATTCCGAGTACCGTTGGTAATCTCTCTTTTCTTCAGCTTATCAACCTTTCATATAATCACTTCTCCGGTGAGATTCCGGCGACGTTTGGGGAGCTTCAGAAACTGCAATATCTATGGCTTGATCATAATTTTCTTGAAGGAACGCTACCTTCTGCACTTGCTAATTGTTCTTCGCTTGTTCATTTGAGCGGTGAGGGAAATTCACTCGGCGGCGTGATTCCGTCGGCGATTTCGGCGCTTCCAATGCTTCAGGTGATGTCTCTTTCTCAGAATAATCTTACTGGTTCAATTCCTGCTTCTGTTTTCTGCAATGTTTCTGTTCACGCGCCGTCGTTGCGGATAGTTCAACTTGGATTCAATGGTTTCACGGATTTCGTTGGGCTCGAGACAAACACGTGTTACAGTGTTCTTCAGGTTTTGGATATTCAACACAATCATATAAGAGGCACGTTTCCCTTGTGGTTGACCAATGTAACCACGTTATCTGTGCTTGATCTTTCGAGCAATGTACTTTCCGGCGAGATTCCGCGGCAAATTGGAAATCTCGCTGCATTGACGGAGTTGAAGGTGGCTAATAATTCATTCACTGGCGTCATTCCGGTGGAAATCAAGAAATGTGGGTCCCTCAgtgttgttgattttgaaggcAACAATTTTGCCGGTGAAGTTCCTTCGTTTTTCGGCGATATGAAGGGACTCAAGGTGCTGTCTCTTGGTGGAAATCGCTTCTTTGGTTCAGTTCCTGTGAGTTTTGGTAACCTTTCTTTACTTGAAACCTTGAGTTTGAGAAGCAATAGATTAAATGGAACTATGCCTGAAATGATAATGAGTTTGAGCAATTTAACAAAACTGGACCTTAGTGATAACAAGTTTACTGGTGTAATTTATGATAGTATTGGGAATTTGAATCGATTAATGGTTCTAAATCTGAGTGGTAACGGCTTCTCTGGAAAAATCCCTTCTAGTTTGGGCAATCTTTTCAGGCTAACTACACTTGATTTGAGCAAACAGAATCTCTCTGGAGAGTTACCATTTGAGCTCTCTGGATTGCCCAATCTGCAGGTTATTGCTCTGCAGGAGAACAAGTTGTCTGGTGTAGTTCCTGAAGGTTTCAGCAGTTTGATGAGTTTGCAGTATGTCAATCTTAGTTCTAATGCTTTTTCTGGGCATATTCCTGAGAACTATGGTTTTCTTCGATTGTTGGTTGTTCTTTCGTTGTCTCATAATCACATTACAGGAATAATTCCTTCAGGAATTGGAAACAGCTCTGCTATTGAAATTCTCGAGCTTCGATCAAATTCATTGGCTGGTCGAATTCCTACCGAGCTTTCTCGCCTAACACATTTGAAAGTGCTTGATTTGGGTGGTAACAAATTAACTGGGGATATGCCTGAGGATATCTCCGAATGCTTGTCATTGACCACATTGTTAGTAGATAACAACAATCTTGCTGGTGCCATACCAGGGTCATTGTCGAATCTGTCAAAGCTAACAATGCTGGATCTCTCTGCTAACAACTTGAGTGGGGAAATTCCTAGTAATTTGTCTACGATCCCTGGTTTGGTCTATTTCAATGTCTCGGGGAACAATTTGGAAGGTGAGATACCGCAAACTTTGGGATCAAGGTTCAACAACCCTGCTGTATTTGCTGATAATCAGGGTTTATGTGGGAAGCCATTGGAATCAAAGTGTGAAGGTACAAACAATAGGGACAAAAAGAGGTTGATTGTGTTGATTATCATCATTGCAATTGGAGCTTGCATATTAGTCCTGTTTTGCTGTTTTTACATCATTGGCTTATGGAGATGGCGCAAGAAGCTCAAAGAAAGGGTTTCTGGGGAGAAGAAAAAGAGTCCAGCAAGAGCAAGTTCAGGAGCAAGTGGAGGCCGTGGCAGCAGTGAAAATGGTGGGCCAAAACTGGTGATGTTCAACACCAAAATCACACTTGCTGAAACAATTGAAGCAACGAGACAATTCGACGAAGAAAATGTACTAAGCAGAACAAGGTTTGGACTAGTATTCAAGGCCTGCTACAATGATGGAATGGTCCTTTCAATTCGCAGGCTCCATGATGGATCATTGGATGAGAACATGTTCAGGAAAGAAGCTGAATCACTAGGCAAAATAAAGCACAGAAATTTAACGGTTCTCAGAGGCTACTATGCAGGACCACCAGATATGAGACTCTTGGCCTATGATTACATGCCCAATGGAAACCTTGCAACACTCCTCCAAGAAGCTTCTCACCAAGACGGCCATGTTCTAAATTGGCCAATGCGGCACCTCATTGCACTTGGAATTGCCCGTGGGTTAGCCTTCATACACCAATCCACAATGGTCCATGGCGACGTGAAACCGCAAAACGTTCTATTCGATGCAGACTTCGAAGCCCATTTATCAGATTTCGGGTTAGAAAGACTAACAGTAGCCACTCAAGTAGACGCTGCCTCCAGTTCAACTTCAGTTGGCACATTGGGTTACGTTTCGCCTGAAGCAATCTTAACCGGCGAAGTCACAAAGGAATCCGATGTTTACAGCTTTGGCATTGTGTTATTGGAACTTCTAACAGGAAAGAGACCAGTAATGTTCACACAAGACGAAGACATAGTGAAGTGGGTGAAAAAACAGCTTCAAAGAGGTCAAATTACAGAGCTATTAGAACCTGGTTTACTTGAATTGGACCCAGAATCATCAGAATGGGAAGAGTTTTTACTAGGGGTCAAAGTTGGTTTACTTTGCACAGCACCAGATCCTCTTGATCGACCAACCATGTCCGACATTGTTTTCATGCTCGAAGGTTGTCGTGTTGGTCCTGATATCCCATCCTCAGCTGAACCAACCTCTCATCATTCTCCGGCATAA 3402 0.4306 MHTFLFILLLCAPILSYADNSNATVTVTVTEIQALTSFKLNLHDPLGALDGWDPSSPEAPCDWRGVACNNDRVTELRLPRLQLGGKLSERLSELRMLRKLSLRSNFFNGTIPRALMKCKLLRFLFLQDNVFSGEIPPEIGNLTGLKILNVAQNNLSGTVPVELPIGLKYLDLSSNAFSGEIPSTVGNLSFLQLINLSYNHFSGEIPATFGELQKLQYLWLDHNFLEGTLPSALANCSSLVHLSGEGNSLGGVIPSAISALPMLQVMSLSQNNLTGSIPASVFCNVSVHAPSLRIVQLGFNGFTDFVGLETNTCYSVLQVLDIQHNHIRGTFPLWLTNVTTLSVLDLSSNVLSGEIPRQIGNLAALTELKVANNSFTGVIPVEIKKCGSLSVVDFEGNNFAGEVPSFFGDMKGLKVLSLGGNRFFGSVPVSFGNLSLLETLSLRSNRLNGTMPEMIMSLSNLTKLDLSDNKFTGVIYDSIGNLNRLMVLNLSGNGFSGKIPSSLGNLFRLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGVVPEGFSSLMSLQYVNLSSNAFSGHIPENYGFLRLLVVLSLSHNHITGIIPSGIGNSSAIEILELRSNSLAGRIPTELSRLTHLKVLDLGGNKLTGDMPEDISECLSLTTLLVDNNNLAGAIPGSLSNLSKLTMLDLSANNLSGEIPSNLSTIPGLVYFNVSGNNLEGEIPQTLGSRFNNPAVFADNQGLCGKPLESKCEGTNNRDKKRLIVLIIIIAIGACILVLFCCFYIIGLWRWRKKLKERVSGEKKKSPARASSGASGGRGSSENGGPKLVMFNTKITLAETIEATRQFDEENVLSRTRFGLVFKACYNDGMVLSIRRLHDGSLDENMFRKEAESLGKIKHRNLTVLRGYYAGPPDMRLLAYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFIHQSTMVHGDVKPQNVLFDADFEAHLSDFGLERLTVATQVDAASSSTSVGTLGYVSPEAILTGEVTKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSAEPTSHHSPA 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00813 1133 SMART LRR_typ_2 260 284 IPR003591 -
Tsu05g00813 1133 SMART LRR_typ_2 410 433 IPR003591 -
Tsu05g00813 1133 SMART LRR_typ_2 458 481 IPR003591 -
Tsu05g00813 1133 SMART LRR_typ_2 94 118 IPR003591 -
Tsu05g00813 1133 SMART LRR_typ_2 578 602 IPR003591 -
Tsu05g00813 1133 SMART LRR_typ_2 674 698 IPR003591 -
Tsu05g00813 1133 SMART LRR_typ_2 626 650 IPR003591 -
Tsu05g00813 1133 SMART LRR_typ_2 530 553 IPR003591 -
Tsu05g00813 1133 SMART LRR_typ_2 212 235 IPR003591 -
Tsu05g00813 1133 SMART LRR_typ_2 434 457 IPR003591 -
Tsu05g00813 1133 SMART LRR_typ_2 142 166 IPR003591 -
Tsu05g00813 1133 SMART LRR_typ_2 338 362 IPR003591 -
Tsu05g00813 1133 SMART LRR_typ_2 482 506 IPR003591 -
Tsu05g00813 1133 Gene3D Ribonuclease Inhibitor 28 164 IPR032675 -
Tsu05g00813 1133 SUPERFAMILY RNI-like 403 721 - -
Tsu05g00813 1133 Gene3D Phosphorylase Kinase; domain 1 813 914 - -
Tsu05g00813 1133 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1129 - -
Tsu05g00813 1133 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Tsu05g00813 1133 PRINTS Leucine-rich repeat signature 461 474 - -
Tsu05g00813 1133 PRINTS Leucine-rich repeat signature 674 687 - -
Tsu05g00813 1133 SMART LRR_sd22_2 458 484 - -
Tsu05g00813 1133 SMART LRR_sd22_2 626 649 - -
Tsu05g00813 1133 SMART LRR_sd22_2 338 364 - -
Tsu05g00813 1133 SMART LRR_sd22_2 410 436 - -
Tsu05g00813 1133 SMART LRR_sd22_2 212 238 - -
Tsu05g00813 1133 SMART LRR_sd22_2 674 697 - -
Tsu05g00813 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 959 971 IPR008271 GO:0004672|GO:0006468
Tsu05g00813 1133 Gene3D Ribonuclease Inhibitor 165 242 IPR032675 -
Tsu05g00813 1133 Gene3D Ribonuclease Inhibitor 456 748 IPR032675 -
Tsu05g00813 1133 Pfam Leucine rich repeat 508 566 IPR001611 GO:0005515
Tsu05g00813 1133 Pfam Leucine rich repeat 166 223 IPR001611 GO:0005515
Tsu05g00813 1133 Pfam Leucine rich repeat 437 494 IPR001611 GO:0005515
Tsu05g00813 1133 Pfam Leucine rich repeat 581 639 IPR001611 GO:0005515
Tsu05g00813 1133 Pfam Leucine rich repeat 317 374 IPR001611 GO:0005515
Tsu05g00813 1133 Pfam Leucine rich repeat 652 711 IPR001611 GO:0005515
Tsu05g00813 1133 SUPERFAMILY RNI-like 72 399 - -
Tsu05g00813 1133 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 4 1129 - -
Tsu05g00813 1133 ProSiteProfiles Protein kinase domain profile. 839 1120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00813 1133 SUPERFAMILY Protein kinase-like (PK-like) 818 1121 IPR011009 -
Tsu05g00813 1133 MobiDBLite consensus disorder prediction 794 819 - -
Tsu05g00813 1133 Pfam Protein kinase domain 849 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00813 1133 Gene3D Transferase(Phosphotransferase) domain 1 915 1119 - -
Tsu05g00813 1133 Gene3D Ribonuclease Inhibitor 243 354 IPR032675 -
Tsu05g00813 1133 Gene3D Ribonuclease Inhibitor 355 455 IPR032675 -
Tsu05g00813 1133 SMART serkin_6 839 1110 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00813 Tsu-Chr5 6943575 6947825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00813 4 1133 Receptor kinase-like Gene Family AT4G36180 67.923 0.0 1486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Tsu05g00813 Pkinase 1.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00813 - - gmx:100795838 1780.38