Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00810 ATGCGAACGCTTTGTGACGCTTGTGAGAGCGCTGCTGCTATAGTTTTCTGTGCTGCTGATGAGGCTGCACTCTGTCGTGCTTGTGATGAGAAGGTTCATATGTGTAATAAACTAGCTAGTAGACATGTTAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCGCGCTGCGACATATGTGAGAATGCACCTGCTTTCTTTTATTGCGAAACAGATGGAAGTTCCCTTTGTTTGCAATGTGATATGATAGTTCATGTTGGCGGTAAAAGAACACATGGAAGATATCTTTTGTTTAGGCAAAGAGTTGAGTTTCCAGGTGATAAACCTAGTAATGCCGACAACCCAACTTCGCAACCTTTGGATCCCGGTGATATTAAAAGAGGACAAAGTCCACTTCCCAAACAAAAATCGGGAGAGAAGCAACAAAATAATCACCGGATGCCTCCGGTTCCAACTTCAGAACCTGATGCTGGTGGAAATACTAAGATGGACAATAAATTGATTGATTTGAACATGAAGCCTAACAGAATACATGAGCATGCATCAAATCATCAGCCATAG 558 0.4283 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPSNADNPTSQPLDPGDIKRGQSPLPKQKSGEKQQNNHRMPPVPTSEPDAGGNTKMDNKLIDLNMKPNRIHEHASNHQP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00810 185 SMART bboxneu5 51 96 IPR000315 GO:0008270
Tsu05g00810 185 SMART bboxneu5 1 47 IPR000315 GO:0008270
Tsu05g00810 185 MobiDBLite consensus disorder prediction 103 185 - -
Tsu05g00810 185 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 184 - -
Tsu05g00810 185 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Tsu05g00810 185 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Tsu05g00810 185 MobiDBLite consensus disorder prediction 133 148 - -
Tsu05g00810 185 Gene3D Classic Zinc Finger 2 91 - -
Tsu05g00810 185 CDD Bbox1_BBX-like 4 47 - -
Tsu05g00810 185 MobiDBLite consensus disorder prediction 168 185 - -
Tsu05g00810 185 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Tsu05g00810 185 CDD Bbox1_BBX-like 56 96 - -
Tsu05g00810 185 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tsu05g00810 185 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Tsu05g00810 185 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00810 Tsu-Chr5 6903092 6906224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00810 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 60.656 1.51e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Tsu05g00810 zf-B_box 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00810 - - gmx:100780544 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00810 05 6903092 6906224 Tsu05g00810 05 6903092 6906224 ECH
Tsu02g02466 02 25164827 25165938 Tsu05g00810 05 6903092 6906224 ECH