Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00807 ATGATGGAAGAACTACAGCAGCAACAGATTCAGCAACCGGTGGTGATACCGGTGACCGGAGAAGTTAGGGTTTCTGAAAATTCTCAGATGATGATCGGAGTCAACGCTTCCGATGTTGACTTCACGATGACCGACGGTGGTAGTTGTGACACTGTTTTGAAAAGGAAACGTGGTCGTCCACCGAAAGGAACTCTTCCTCTTCCACCTCATCCACGGTTGAAAAAGCcgaaagatgaagaagatgtttgttttatttgttttgatggtGGTTCACTTGTTCTTTGTGATTATCGgGGTTGTCCTAAGGCGTATCATCCAGCATGTGTTAAGCGTGATGAAGAGTTTTTCCGTTTAACTGAGAAATGGAATTGTGGTTGGCATCTATGTAGCGATTGTGGCAAATCATGCCACTACATGTGCTATACTTGTACATATTCCCTGTGCAAGGGATGCACAAAAAAAGAATCTGATTTTGTTAGTGTCAGAGGAAACAAAGGTTTGTGTGGAGCATGCAAGAGGACAATATTGCTGATCGAAAACAGTGCCCTGGGAATTAAGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGGAAAACTATCTCTTGATTTTGATGAGATCCTTCGAGCTAAAAATCCATGGAAAAGTGCTGTTCGTGCTAGTTGCAAGGTTCAAACTCCCCGAAAACTTCATCATCTTAAAGTTGACAATGGTTATGGATCCGAGAATTCCTGTATAGTAGATTCAAATAGTCCAATAAACAAGAAGGTTAAGGAAAATATTTGGGACAGTTTATTGGACGGTACTGGACACAATGCACAAGACTTGTCGACTACCTGTAAGCTAAATGGGAATACATGTGTAATAAAGAACCAAATCAATCCTAATGAATCAGCAATCGATGATGCCACTAATCCAATATTTGTGAGACTACGAGAAACAGTCTGGCATTATCAGGATCCACATGGGAAGGTTCAAGGCCCTGTTAGTATGTTGTTGCTGTGCAAGTTGAAAGGAACTGAACGTCTCCCTCCAGATCTCAGAATATGGAGGATAGAAGAGAAACAAGAGAACTCTATATTATTATCTGATGCATTGAGTTTGAAGTGTTTCCAAAAAGTATCATTGCCACTCAACTGTGAACAACAGTCTTTGGGGGCCAGTGTTACATTAGAAACCACCACAGAAAATAGTCAAGGTGATCTTAGCAATGAAACAAGGAGTCAAATTTGTGCTAACAACCAAACTCTCAAGCAAGGCGAGGCGGAAAAGGTGGGTGATACTTATACCCCACCCAATGGTACAGATGAATCTGTTAAGAGCAATGGAGGGCACACTCCGTCTCCTGGTTTGACTACACAAGCGGATGGGAATATAAGTGATGGGCAAAGTGGTCATTTTGAACGAAGGGAAGAGTCACCCAAATGTGACATTTCTTGTCATTATGGTCCCGACGTACATCCTGCACTACCTTCAACTGGCTTTGATGAGAAATTGAATGACAAACCTTCTGATAAAGTGGTGGAAGGTCATGGGAATGAGCAAAAAGCTGAAGTGAATGGAAATTTGGGTTCTAATAGGTCTTCTGAGGGTCCGAGTAATAGTGGGCAAAGTGATCAGAAGCAATCTGACAATGAAGAGAATTCGGGTCAATCTTCTGGTCAGAATTGGAGAGGCCCTAGTGTAATTCATCATCCACCAATGGATACTTCTTCATGGATAGCATCAATCTTCGGCGATACTGATTGCCCATTAGTTGATGATTCAGTTTCAGATCTGTTGGAACAAGTAGCAGCAAAGGAGAAAGATGGTGTATTGGAAACTCCCACAGCAATAGAGTGGGATGATGAGTTGACCGAGGGTGCTATAACTGATTGTTTCAGTTTTGCCGCTAATGCACTTAGCCCAATGCTTGATACAGGTAAAGGTGATGCACTGAGCTCCTCAAGTGATTTACATTTACCATCTCAATCCACTGCAGCTGAGGAGCCATTTCGGCAAGCAGACGTGCATAATCATCAAACTATATGTGGGGAACAATCCTCAAAAGCTCCTGAAGTTGAGTCTACTTTTTCGGGTATTCGCTGGAATCCAACTCATCAATTTTCATGGGATCCGACTCGTTGA 2163 0.4152 MMEELQQQQIQQPVVIPVTGEVRVSENSQMMIGVNASDVDFTMTDGGSCDTVLKRKRGRPPKGTLPLPPHPRLKKPKDEEDVCFICFDGGSLVLCDYRGCPKAYHPACVKRDEEFFRLTEKWNCGWHLCSDCGKSCHYMCYTCTYSLCKGCTKKESDFVSVRGNKGLCGACKRTILLIENSALGIKCEVDFDDKSSWEYLFKVYWMYLKGKLSLDFDEILRAKNPWKSAVRASCKVQTPRKLHHLKVDNGYGSENSCIVDSNSPINKKVKENIWDSLLDGTGHNAQDLSTTCKLNGNTCVIKNQINPNESAIDDATNPIFVRLRETVWHYQDPHGKVQGPVSMLLLCKLKGTERLPPDLRIWRIEEKQENSILLSDALSLKCFQKVSLPLNCEQQSLGASVTLETTTENSQGDLSNETRSQICANNQTLKQGEAEKVGDTYTPPNGTDESVKSNGGHTPSPGLTTQADGNISDGQSGHFERREESPKCDISCHYGPDVHPALPSTGFDEKLNDKPSDKVVEGHGNEQKAEVNGNLGSNRSSEGPSNSGQSDQKQSDNEENSGQSSGQNWRGPSVIHHPPMDTSSWIASIFGDTDCPLVDDSVSDLLEQVAAKEKDGVLETPTAIEWDDELTEGAITDCFSFAANALSPMLDTGKGDALSSSSDLHLPSQSTAAEEPFRQADVHNHQTICGEQSSKAPEVESTFSGIRWNPTHQFSWDPTR 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00807 720 Gene3D - 327 383 IPR035445 -
Tsu05g00807 720 MobiDBLite consensus disorder prediction 426 580 - -
Tsu05g00807 720 SUPERFAMILY FYVE/PHD zinc finger 78 127 IPR011011 -
Tsu05g00807 720 MobiDBLite consensus disorder prediction 530 571 - -
Tsu05g00807 720 SUPERFAMILY GYF domain 317 379 IPR035445 -
Tsu05g00807 720 CDD PHD5_NSD 82 127 - -
Tsu05g00807 720 MobiDBLite consensus disorder prediction 475 490 - -
Tsu05g00807 720 MobiDBLite consensus disorder prediction 654 673 - -
Tsu05g00807 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 174 IPR013083 -
Tsu05g00807 720 ProSitePatterns Zinc finger PHD-type signature. 83 143 IPR019786 -
Tsu05g00807 720 SMART PHD_3 82 128 IPR001965 -
Tsu05g00807 720 MobiDBLite consensus disorder prediction 443 473 - -
Tsu05g00807 720 MobiDBLite consensus disorder prediction 510 525 - -
Tsu05g00807 720 PANTHER BNAC08G48800D PROTEIN 317 691 - -
Tsu05g00807 720 PANTHER BNAC08G48800D PROTEIN 16 271 - -
Tsu05g00807 720 MobiDBLite consensus disorder prediction 653 673 - -
Tsu05g00807 720 PANTHER UNCHARACTERIZED 16 271 - -
Tsu05g00807 720 PANTHER UNCHARACTERIZED 317 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00807 Tsu-Chr5 6864633 6869052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00807 80 154 PHD Transcription Factor Family AT4G14920 38.667 3.86e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00807 - - mtr:MTR_5g021450 991.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00807 05 6864633 6869052 Tsu05g00807 05 6864633 6869052 ECH