Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00798 ATGCTTTACCAAACTCCCTATCCTCTTCTCTTTCAATTTCATCCCttaccttcatcttcttcttctttcaccATTCCTCTCTCAACCATATCACAACCCCAACTTCCTCTCACAAAggTTTCAAAAACAGAAATGGAGTGCGTTGAAACAGCGTTGAAAACAAGTTTAAGGAAAGACATAACTCCTCAAACATTTGTTGATGAGCTTACAAGTCTTAATGCACAAAATGGAACAACCTCCGACGATTTTTTCGTCGACGACCTCCTTGATTTCTCTCATGttgaagaacaacaacaacaagacgAAGAACAgcaacaacagcagcaacaacaacaagacTCTGTTTTTGTCTCTGTCAAACAAACCCATGAAATTTCAAACCTCAACAACACCAACAGCAACAGTTTTTCTGTCAAAAATGATTATGCTTCTCTACCCACTAGCGAACTCAACGTCCCGaGTGATGATGTAGCAGATGATTTAGAATGGCTTTCACATTTTGTTGAAGATTCTGATTCTTTCTCGGAATTTTCTGCTGTTATGCCGGTTGTAACTTCAACAACAACAGAGAAAAACCCAAAGGGTGTTGTGGTTTCTGAGAACAAGCCCAAGAATGAAAACCCAAGCCCGGGCCCGGTTGTTACTACTTTCAAAACTCCGGTTCAGACAAAAGCAAGAAGCAAAAGGACAAGAACCGGAACCGGTGTTCGGGTTTGGCCATTCGGGTCAAATACTACTTTAACCGACTCTTCTTCAAGCTCCACAACTTCATCTTCAACTTCTTCGTCTCCAACTAGCCCCTTGTTGATTTACACCAACTTGGTTCAAAAATTTGACTCGGTTCCGGTGAAAAAGCAGAAGAAAACGACAAATTTTAATGGGTCAGGTCATGGCACGGTGGTTGCAGCGGCGGCGCCGCGACGGTGCAGTCATTGCGGTGTAACTAAGACTCCTCAGTGGCGAACTGGTCCTCTTGGTGCAAAAACGCTTTGTAATGCTTGTGGGGTCCGGTATAAATCTGGTCGGTTATTACCGGAATACCGACCCGCTTGTAGTCCTACATTTTCAAGTGAATTGCACTCTAACCATCACAGGAAAGTGATTGAAATGCGGCGGAAGAAGGAGGTTGCTGGTGgtgttgaaattgaaactgGTTTGTCCCCTTCTCCGGTTGTTCCAAGTTTTTGA 1188 0.4007 MLYQTPYPLLFQFHPLPSSSSSFTIPLSTISQPQLPLTKVSKTEMECVETALKTSLRKDITPQTFVDELTSLNAQNGTTSDDFFVDDLLDFSHVEEQQQQDEEQQQQQQQQQDSVFVSVKQTHEISNLNNTNSNSFSVKNDYASLPTSELNVPSDDVADDLEWLSHFVEDSDSFSEFSAVMPVVTSTTTEKNPKGVVVSENKPKNENPSPGPVVTTFKTPVQTKARSKRTRTGTGVRVWPFGSNTTLTDSSSSSTTSSSTSSSPTSPLLIYTNLVQKFDSVPVKKQKKTTNFNGSGHGTVVAAAAPRRCSHCGVTKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKEVAGGVEIETGLSPSPVVPSF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00798 395 MobiDBLite consensus disorder prediction 187 266 - -
Tsu05g00798 395 CDD ZnF_GATA 308 356 IPR000679 GO:0006355|GO:0043565
Tsu05g00798 395 PANTHER GATA TRANSCRIPTION FACTOR 45 378 - -
Tsu05g00798 395 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 303 365 - -
Tsu05g00798 395 Pfam GATA zinc finger 309 343 IPR000679 GO:0006355|GO:0043565
Tsu05g00798 395 ProSitePatterns GATA-type zinc finger domain. 309 334 IPR000679 GO:0006355|GO:0043565
Tsu05g00798 395 PANTHER GATA TRANSCRIPTION FACTOR 45 378 - -
Tsu05g00798 395 Gene3D - 302 376 IPR013088 GO:0006355|GO:0008270
Tsu05g00798 395 MobiDBLite consensus disorder prediction 237 266 - -
Tsu05g00798 395 SMART GATA_3 303 357 IPR000679 GO:0006355|GO:0043565
Tsu05g00798 395 Coils Coil 94 114 - -
Tsu05g00798 395 ProSiteProfiles GATA-type zinc finger domain profile. 303 339 IPR000679 GO:0006355|GO:0043565
Tsu05g00798 395 MobiDBLite consensus disorder prediction 202 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00798 Tsu-Chr5 6761649 6763292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00798 49 395 C2C2-Gata Transcription Factor Family AT5G66320 47.765 7.82e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu05g00798 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00798 - - var:108335072 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00798 05 6761649 6763292 Tsu04g03477 04 43919630 43921122 ECH
Tsu05g00798 05 6761649 6763292 Tsu05g00798 05 6761649 6763292 ECH
Tsu05g00798 05 6761649 6763292 Tsu04g03477 04 43919630 43921122 PCT