Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00795 ATGGGTCGTGGGAAGATTGAGATAAAGTTGATTGAGAATCCAACAAACAGGCAAGTTACATACTCAAAGAGAAGAAATGGTATATTCAAGAAAGCTCATGAACTTAGTGTTCTTTGTGATGCTAAGGTTTCACTCATTATGTTCTCTAAAAACAACAAGATGCATGAATACATCACCCCTGGCCTTTCTACAAAGAAGATTATTGATCAGTATCAGAAGACTTTGGGGGATATTGATCTATGGCGTTCACACTATGAGAAAATGCTTGAAAACTTGAAGAAACTGAAAGATATTAACCATAAACTTAGAAGACAAAtcagGCATAGAATAGGTGAAGGTGGTATGGAATTGGATGATCTGAGCTTCCAGCAACTTCGCAGTCTTGAAGAAGATATGAATTCTTCCATTGCAAAAATTCGTGAGAGGAAGTTCCATGTGATCAAAACTAGGACTGATACCTGTAGGAAAAAGGTTAGAAGCTTGGAGCAAATGAATGGAAATCTCCTTCTTGAACTTGAAAAGTGTGTGATCCATCCACAATTTCTTTTCCACGACGAAGGAGACGAGGAATCAGCTGTTGCATTGGCTAATGGTGCTTCTACACTGTATGCATTCTGTCAGCACCATTCTCAAATGAATCTTCCTCATCATCATGGAGGAGAAGAAGGTTTCAAGAACGACGATTTGCGCCTTGGTTGA 699 0.3863 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLSTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINHKLRRQIRHRIGEGGMELDDLSFQQLRSLEEDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELEKCVIHPQFLFHDEGDEESAVALANGASTLYAFCQHHSQMNLPHHHGGEEGFKNDDLRLG 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00795 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu05g00795 232 Coils Coil 85 105 - -
Tsu05g00795 232 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu05g00795 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Tsu05g00795 232 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu05g00795 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu05g00795 232 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Tsu05g00795 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu05g00795 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu05g00795 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu05g00795 232 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Tsu05g00795 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Tsu05g00795 232 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 231 - -
Tsu05g00795 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tsu05g00795 232 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00795 Tsu-Chr5 6732160 6734527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00795 1 219 MADS-box Gene Family AT3G54340 48.182 2.64e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu05g00795 K-box 8.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00795 K09264 - gmx:100784496 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00795 05 6732160 6734527 Tsu05g00795 05 6732160 6734527 ECH