Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00785 ATGGctgcttcaaattcttcagtTCCAATGGGTACATATGGAAATGGTGCTTTCCCTGGAAATCTTCTAATATTGAATGGAAAGAATTATGATACGTGGTGCAAACAGATGAAGGTGGTGTTTGGGTTTCAAGATGTGTGGGATCTTGTGCAAAGTGGAGTGGAACCAATCACTGATACTTCAACTGATGTAGAGAAGGCTACATtcaaagaattgaagaagaaagactaCAAAGCtctcttcatcattcatcaatgtgtaagtccagataattttgaaagagttGGTGATGCTCTATCATCcaaggaagcatgggataatCTTGAGAAAGCTTATGGTGGTGCAACCAAAGTCAAGAAGGTAAGGCTACAAACttacaaaagacaatttgaattgttacaattggaagagaaagaaagtgtAGGTGATTTTGTCACAAGAGTTACCAAATTGGTAAATCTAATGAAAGGCTGTGGTGAGTCAATGAATGATCAATCTGTAGTGGAAAAGATTTTAAGATCTCTCACACCAAGATTTGATATAGTGGTGGCTATAGAGGAATCTAAGGATCTCTCAAGCACAACTGTTGAAGAGATACAGGGAGTATTGGAAGCCTCTGAACAGAAATCGAATGAAAGATTAGAAAAGAGCAAgaatgaagttgctcttcaagcACACAACAATCAAGCCAAGAAAGGAAAGGGAAAGTGGTCAGGGAACAGAGGAAGAGGTGGATATCAAGGTTCCAATGCTAAAGATAACCAAGAAAAtggaaatccaaatcaaaataatgGTGGAAGAGGTGGTTTTAATGGAAATCACAGAGGAGGAAGAGGTGGAAGAGGAGGTAGAAATGGTAGAGGTGGTTTCAATGGATACAAAGGATTTGACAAGAGTAATGTgcaatgttacaattgtcaaaagTATGGACACTTTGCTGATGAGTGTAGGTCCAAGAATGAATCACAAGATGATGAGGCAAGAGTAGCTAAGCAAGATGAAAGTGAGAATCCAGTAATGTTGATGGTTACAACTaaagaatatcaaagatgtggTGAAGAATGGTACTTGGATTCTGGATGTTCTACACATATGACTGGGAGAAGAGATTGGTTTAGTAGCTTTGATCAATCCCATAGAAACAAAGTGAAATTTGCAAATGATAGCACATTGAATGCAGAAGGTGTGGGTGTTGTGTGCATCAGAAGCAAAAATGGTGATCAAGCCTTCATCAATGATGTGCTCTACATCCCAGGTATCAAGTGTAATCTTCTTAGTGTAGGACAGTTAATTGAAAAGGATTATAAGATTGTCATAGAAGATAGAATGATGAAGTTAATGGATTCAAACagaaagttgattttgaaagctcCAATGTCTAGAAATAGAACTTTCAAAATTGAACTTAATGTGATGAATCATATGTGCCTAGCTACTGCAATTGAAAGAGATGATTGGACTTGGCATTATAGATTTGGTCATTTGAACTTTAGAGATTTGAATATGATGTCAAATAAGAGCGTTGTGTCTGGTTTACCTAAAATTCAAATACCAAATGAAGTATGTGAAGATTGTGTACAGTCCAAGCAACACAGGGACAGTTTCAATAAGGATGTGAAGAGTAGAACCAAGAGTGTATTGGAAGTGATCTACTCAGATGTGTGtggacctatgcaagtagatTCAAATGGTGGAAATAGATACTTTGTATCTTTTGTTGATGATCACAGTAGAAAGCTATGGACTTATCTGATTAAAAGGAAGAGTGAAGTGTTTGATGTGTTTAAGAAGTTTAAGGCTATGGCTAAGAAACAAAGTGATCATAAATTGAAGGTATTAAAGACTGATGGTGGAGGAGAATATGTGTCTAAAGTCTTCTCTGAATTTTGTGAAGCTGAGGGTATAGTACATGAGGTAATTCCACCCTatactccacagcaaaatggcaGTGCAGAGAGAAGAAATAGAACCATAATGAATATGGTAAGATGCATGATCAGAGGTAAGCATTTGCCAAAGGAATTATGGGGAGAGGCAGTGAATACTGCTTGCTATGTGCTCAACAGATGCCCAACCAAGAGATTGAATGATGTGACACCAGAAGAATGTTGGAGTGGAAACAAGCCAAATATGAGTCATTTGAAAGTGTTTGGGTCTATTGCATATAGACATGTGCCTGATCAATTGAGAAGCAAACTAGATGACAAGAGTGAAGTCATGGTGCTAGTTGGTTATCATCTAACTGGTGGTTACAGACTCTATGATCCTATAAGCAAGTCAATAGTGATCAGTAGAGATGTAATtgttgatgaaatgaaagaatggGACTGGTGTAGCAATAAGAAGAAGGATTCAGTTAGCATAATGTTTGATGATGTACACACAGCACCAGCagaaacaaatgaaagtgaAGTAAGGAGATCAACAAGAGCTAGAGCACAGCCAGCTAGACTCAATGACTGCATAATCACCAGTGATAATGATGTCAATGCAGAGGGTGATTTAGTTCACTTAGCATTCAATGCTGAAGCTGAACCTGTGAATTTTGAAGATGCAGTCAAGGATGAGAAATGGTTAAATGCCATGAATGAAGAGATTGAGTCAATTGAGAGAAACAATACATGGGAGCTAGTTGATCTTCCACATGGTAAGAAAGCAATTGGAGTAAAATGGGTGTATAAAGTGAAACTGAATCCAAAGGGTGAAATAACTAGAcacaaagcaagactagtagTGAAAGGGTTTCTACAGAAGGAAGGGATAGATTTCAATGAAGTCTTTGCCCCTGTAGCAAGAATGGAAACCATAAGGTTAGTGACAGCCTTAGCACATCACAACAATTGGTCTAtgcaccaaatggatgtgaaatgtGCATTTTTGAATGGTCCACTTGATGAAGAAGTTTATGTGGTACAACCTCCAGGATTCACTAGCAAAGAAGATGAATTCAAGGTGTACAAGCTGCATAAGGCATTGTATGGgcttaaacaagctccaagagcttggaacaagagaattgaTAAGTTCCTAGGTGATATTGGCTTCAGAAAATGTGTGACAGAACATGGAGTGTATGTGAAGAATTGTGCTGAGAAAGGAACTATAATACTATGcctatatgtggatgatttgcTTATTACAGGTAGTAATGAAGCTCACATCAGAGAGTTCAAAGTGGACATGATGAGAGAGTTTGAAATGACTGACCTAGGTCACATTTCATACTTTCTAGgaattgaatttcaaagaaCAAGTAAAGGGTTGATACTACATCAAAAGAAATATGCTAGTGAGATTTTGAAGAGGTTTGAGATGGATCAATGCAATCCAGCTCTTACTCCATCAGAACCTAGACTTCAATTGTCAAGAGAAACAGAAGAGAAAGATGTAGATTCAACTGAGTATAGAAGGCTTGTAGGTTCTTTGAGATACTTATGCAACACAAGGCCTGATATAGCCTATAGTGTTGGCATAATTAGTAGATACACGGAGAGACCTAAGATGTCTCATTTGTCTGCAGCAAAGAGAATCTTAAGGTACATCAAAGGCACAATGGACTATGGCATTGTGTTCAACAAACCAGACAAGAAAAGCATTGAATTGATAGGGTATACTAATTCAAACTGGTGTGGTGACAAGGATGATAGAAAATCCACTGCTGGATATGTGTTTTTGTATGGAGGAGCTCCAATTTCTTGGTGTTCAAGGAAGGAACCAGTAGTGGCACTATCCACTTGTGAAGCAGAATACATAGCTGCTTCATTAAGTGCTTGTCAAGGAAATCATATATTTCTCAGACTTGCACTTAATACAGGAGTTAGCAAGCTTGTTTTTCCTGTCTATAGAAACATCACTGCTTTCATTCTTCTAGCTCCACTTGCATATTTCACAGAAAAGAAAGATAGGCCAAAAATAACCAGTTATTGTGTGCTACAGTTTTTCCTTCTTGGACTTGTTGGAATAACAATGAAAGAAGGATTTTATCTCTTTGGTTTGGACAACACATCACCAACATTTGCTTCGGCTATGCAAAATTCTGTTCCAGCCCTTACATTTCTGATGGCTGTGATACTAAGGCAATGCAGATATGAGAGCTTACACTTAAATAGGATAAATGGTATGGCTAAGGTTCTTGGAGTACTTGCTTCTGTTGGAGGAGCTTCAATCATTACCCTTTACAAAGGACCTACCATTTATGCTCCAAATTTAGAACTTCATCAAAGACAATTTTTATCGTCTTTATTTGAGGATGGAAATGGGAAAAATTTGAACTTGGGTGGTATCCTTCTATTTGGTCATTGCTTGTGTTGGTCTGGTTGGATTGTGATGCAAGCATTTGTTCTGAAAAAGTACTCAGCGCAACTCACGGTTTCCGCTTTTACTTGCTTCTTTGGTGTTGTGCAATTTGGGACAATTGCAGTCTTTCTTGAGAAAGATCCCAAATCTTGGAAGCTCAATTCCATTGAAGAGGCTTGCAGTATTTTGTACTCGGGACTGGTGATTTCAGGGATGGCAGCAGCAATACAAATATGGACTATTAACAAAGGAGGGCCAGTGCTTGCTTCAATTTATCTTCCCTTACAGACAATACTTGTAGCTTTGATGGCACCCATTGTTTTTGGTGAAGAATTCTTTATGGGAGGGATTATAGGAGCTTTCTTAATTATATCTGGTTTATACCTTGTTGTCTGGGGAAGAAGTCAAGAAACTAATTCCGCCGCCGACGAGTTCGAAGTCTCCATTGAGAATGAGAATAATCTAGAAGAAAAAAGCCAAAATGATACGGAAGATATTCCTCCCGAATCTTGGCATGAAATTGTCCGCAGCTGCAGAAATGGTCCTCTTGCTATAGCTATAGCTATAGCTACAGTACATACTTCTTCTGCTTCACCAGGCAAATTGAGTGTTGTTCCAATATTTGCAATGGAAACAGAATTAGATTTGGATCCAGAACAGCAACAGATGATGGAAGCAGGTTTTTCTAGAACTAATACTATGCAAATTGATCCAAGAAGGTCTCGATTTCCGTGTTCCATTGTTTGGTCACCACTTCCTGTCATTTCATGGTTTATTCCTTTCATTGGTCACATTGGTATCTGTAGAGAGGATGGTGTTATTTTGGATTTTGCAGGTCCTAATTTTGTCTGTGTTGATAGTTTCGCATTTGGTGCTGCTACTAGATATTTTCAAATACCTAAAGAAAAGTGTGGCATCCCTTTAGGCCAGTCTGCATACAAGGGTGAAGAACACTACTTGCAGGACGAAACTGGAGGTGAGTTGAGGAACTGGGATGATGCTCTACGGAAGAGCACTCAAGAATTCCAACACCGATCTTACAGTCTCTTTACTTGCAATTGCCATTCCTTTGTTGCCAATAATTTGAACAGACTCGGCTTCCTGTCCAATGGATGGAATGTGGTGAACCttgcaattttcattttactCAACGGACGCTGGGTCAGCAAAACATCTATGCTGCGAACTATTTTACCGTTTGTGGTTGTATTTTTTCTTGGAGTCACATTGGGAGGCTTCActttcttaaaattttggtcctTATTCTCTTCGGTTCTTATTGGTTGGTTCCTTCTTGGCACTTACTGTTTTAAGAATCTGATTCAGTTGTAG 5628 0.355 MAASNSSVPMGTYGNGAFPGNLLILNGKNYDTWCKQMKVVFGFQDVWDLVQSGVEPITDTSTDVEKATFKELKKKDYKALFIIHQCVSPDNFERVGDALSSKEAWDNLEKAYGGATKVKKVRLQTYKRQFELLQLEEKESVGDFVTRVTKLVNLMKGCGESMNDQSVVEKILRSLTPRFDIVVAIEESKDLSSTTVEEIQGVLEASEQKSNERLEKSKNEVALQAHNNQAKKGKGKWSGNRGRGGYQGSNAKDNQENGNPNQNNGGRGGFNGNHRGGRGGRGGRNGRGGFNGYKGFDKSNVQCYNCQKYGHFADECRSKNESQDDEARVAKQDESENPVMLMVTTKEYQRCGEEWYLDSGCSTHMTGRRDWFSSFDQSHRNKVKFANDSTLNAEGVGVVCIRSKNGDQAFINDVLYIPGIKCNLLSVGQLIEKDYKIVIEDRMMKLMDSNRKLILKAPMSRNRTFKIELNVMNHMCLATAIERDDWTWHYRFGHLNFRDLNMMSNKSVVSGLPKIQIPNEVCEDCVQSKQHRDSFNKDVKSRTKSVLEVIYSDVCGPMQVDSNGGNRYFVSFVDDHSRKLWTYLIKRKSEVFDVFKKFKAMAKKQSDHKLKVLKTDGGGEYVSKVFSEFCEAEGIVHEVIPPYTPQQNGSAERRNRTIMNMVRCMIRGKHLPKELWGEAVNTACYVLNRCPTKRLNDVTPEECWSGNKPNMSHLKVFGSIAYRHVPDQLRSKLDDKSEVMVLVGYHLTGGYRLYDPISKSIVISRDVIVDEMKEWDWCSNKKKDSVSIMFDDVHTAPAETNESEVRRSTRARAQPARLNDCIITSDNDVNAEGDLVHLAFNAEAEPVNFEDAVKDEKWLNAMNEEIESIERNNTWELVDLPHGKKAIGVKWVYKVKLNPKGEITRHKARLVVKGFLQKEGIDFNEVFAPVARMETIRLVTALAHHNNWSMHQMDVKCAFLNGPLDEEVYVVQPPGFTSKEDEFKVYKLHKALYGLKQAPRAWNKRIDKFLGDIGFRKCVTEHGVYVKNCAEKGTIILCLYVDDLLITGSNEAHIREFKVDMMREFEMTDLGHISYFLGIEFQRTSKGLILHQKKYASEILKRFEMDQCNPALTPSEPRLQLSRETEEKDVDSTEYRRLVGSLRYLCNTRPDIAYSVGIISRYTERPKMSHLSAAKRILRYIKGTMDYGIVFNKPDKKSIELIGYTNSNWCGDKDDRKSTAGYVFLYGGAPISWCSRKEPVVALSTCEAEYIAASLSACQGNHIFLRLALNTGVSKLVFPVYRNITAFILLAPLAYFTEKKDRPKITSYCVLQFFLLGLVGITMKEGFYLFGLDNTSPTFASAMQNSVPALTFLMAVILRQCRYESLHLNRINGMAKVLGVLASVGGASIITLYKGPTIYAPNLELHQRQFLSSLFEDGNGKNLNLGGILLFGHCLCWSGWIVMQAFVLKKYSAQLTVSAFTCFFGVVQFGTIAVFLEKDPKSWKLNSIEEACSILYSGLVISGMAAAIQIWTINKGGPVLASIYLPLQTILVALMAPIVFGEEFFMGGIIGAFLIISGLYLVVWGRSQETNSAADEFEVSIENENNLEEKSQNDTEDIPPESWHEIVRSCRNGPLAIAIAIATVHTSSASPGKLSVVPIFAMETELDLDPEQQQMMEAGFSRTNTMQIDPRRSRFPCSIVWSPLPVISWFIPFIGHIGICREDGVILDFAGPNFVCVDSFAFGAATRYFQIPKEKCGIPLGQSAYKGEEHYLQDETGGELRNWDDALRKSTQEFQHRSYSLFTCNCHSFVANNLNRLGFLSNGWNVVNLAIFILLNGRWVSKTSMLRTILPFVVVFFLGVTLGGFTFLKFWSLFSSVLIGWFLLGTYCFKNLIQL 1875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00785 1875 Pfam GAG-pre-integrase domain 473 530 IPR025724 -
Tsu05g00785 1875 Pfam EamA-like transporter family 1273 1359 IPR000620 GO:0016020|GO:0016021
Tsu05g00785 1875 Pfam EamA-like transporter family 1425 1563 IPR000620 GO:0016020|GO:0016021
Tsu05g00785 1875 SUPERFAMILY Multidrug resistance efflux transporter EmrE 1489 1567 - -
Tsu05g00785 1875 SUPERFAMILY Retrovirus zinc finger-like domains 285 324 IPR036875 GO:0003676|GO:0008270
Tsu05g00785 1875 SUPERFAMILY DNA/RNA polymerases 871 1255 IPR043502 -
Tsu05g00785 1875 Pfam Integrase core domain 548 645 IPR001584 GO:0015074
Tsu05g00785 1875 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 872 1115 IPR013103 -
Tsu05g00785 1875 ProSiteProfiles Integrase catalytic domain profile. 539 708 IPR001584 GO:0015074
Tsu05g00785 1875 MobiDBLite consensus disorder prediction 226 286 - -
Tsu05g00785 1875 CDD RNase_HI_RT_Ty1 1202 1266 - -
Tsu05g00785 1875 Pfam Zinc knuckle 302 317 IPR001878 GO:0003676|GO:0008270
Tsu05g00785 1875 Gene3D - 296 364 - -
Tsu05g00785 1875 PANTHER WAT1-RELATED PROTEIN 1258 1585 - -
Tsu05g00785 1875 MobiDBLite consensus disorder prediction 243 269 - -
Tsu05g00785 1875 ProSiteProfiles Zinc finger CCHC-type profile. 303 318 IPR001878 GO:0003676|GO:0008270
Tsu05g00785 1875 SUPERFAMILY Ribonuclease H-like 547 717 IPR012337 -
Tsu05g00785 1875 Pfam Protein of unknown function (DUF778) 1684 1733 IPR008496 -
Tsu05g00785 1875 Pfam Protein of unknown function (DUF778) 1746 1819 IPR008496 -
Tsu05g00785 1875 PANTHER WAT1-RELATED PROTEIN 1258 1585 IPR030184 GO:0016021|GO:0022857
Tsu05g00785 1875 SMART c2hcfinal6 302 318 IPR001878 GO:0003676|GO:0008270
Tsu05g00785 1875 Gene3D - 539 727 IPR036397 GO:0003676
Tsu05g00785 1875 Pfam gag-polypeptide of LTR copia-type 73 212 - -
Tsu05g00785 1875 SUPERFAMILY Multidrug resistance efflux transporter EmrE 1281 1390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00785 Tsu-Chr5 6623623 6635048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00785 1260 1576 Nodulin-like Gene Family AT1G75500 57.143 2.42e-115 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00785 - - mesc:110627805 971.074