Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00783 ATGGCAGGTTTATTTTCACTAGGAAGAAGCGAAGAACAAAATCACCagaataataacaataacaataatccAGTAACAGAATTCTGgtataataacaaaaatgaagATTCAGTTTCTGCATACCGTGGTGGTTTTGAGATTTGGAATGAACAGCCacctcatcatcaacaacagtTTTTTCCTCTTCAACAATCTCAGCATCAACAGCAGCAAGATCTTTACGCCGCCTCTGCCGGTGGTGTTGTGCTAGGAGTTGGACAGAGTAGGGTTTGTTCTTCCGACGACAATAGATCTGCGTTGTTTGTGGCGTCAGGAAGTGGCGGTGGGATAAGTTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTCCTCATATTAGATGTAGGACTTGTTGTAAGAGTAGAGGTTTTGATTGTCAAACTCATGTTAAAAGTACTTGGGTTCCGGCGGCAAAACGCCGCGAAcgacaacaacagcaacaacaacaaccacaacaacagCCACATGGAGAAAGAGATCTTAACAATTCTTCTCTAGCTTGCACTCGTTTACCTATAAACCCTTCACTCACTGTCTCTGCATCAGGGTTACTGGATGAGGTGAATTTTCCGGCGGTGGTGAGTACTCCGGCAGAATTCAGGTGTGTGCGAGTTAGCTCGGTTGATGAGTCTGAAGAAGAGTATGCATATTCAACTGCTGTGAACATTGGAGGACATGTATTCAGAGgaattttgtatgattatggTCCAGATCAAGGGAGTAGTAGTTATAACATGCCTGCTGGAAACGCTTCATCTAGCGGTGGTGGAGCGGCGGTTCAGCCCTTAGAGCTTATATCTGCTGTCCCTGCTGGTGCTGCTGTTGGTGTTGGGGCAATTGTTGATCCATCTTCTTTGTATCCAGCTCCTCTTAACACCTTCATGCCTCCTAGTGGTACGCAATTCTTCCCCCACCCAAGATCATCTTGA 969 0.4045 MAGLFSLGRSEEQNHQNNNNNNNPVTEFWYNNKNEDSVSAYRGGFEIWNEQPPHHQQQFFPLQQSQHQQQQDLYAASAGGVVLGVGQSRVCSSDDNRSALFVASGSGGGISCQDCGNQAKKDCPHIRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQQQQQQQPQQQPHGERDLNNSSLACTRLPINPSLTVSASGLLDEVNFPAVVSTPAEFRCVRVSSVDESEEEYAYSTAVNIGGHVFRGILYDYGPDQGSSSYNMPAGNASSSGGGAAVQPLELISAVPAGAAVGVGAIVDPSSLYPAPLNTFMPPSGTQFFPHPRSS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00783 322 MobiDBLite consensus disorder prediction 151 176 - -
Tsu05g00783 322 MobiDBLite consensus disorder prediction 9 27 - -
Tsu05g00783 322 Pfam Domain of unknown function (DUF702) 109 251 - -
Tsu05g00783 322 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 321 - -
Tsu05g00783 322 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 203 250 IPR006511 -
Tsu05g00783 322 MobiDBLite consensus disorder prediction 1 27 - -
Tsu05g00783 322 MobiDBLite consensus disorder prediction 152 176 - -
Tsu05g00783 322 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 321 IPR007818 GO:0003700|GO:0006355
Tsu05g00783 322 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 111 153 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00783 Tsu-Chr5 6599680 6601384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00783 1 321 C2H2 Transcription Factor Family AT3G51060 44.444 1.36e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tsu05g00783 DUF702 1.1e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00783 - - gmx:100814589 293.508