Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00775 ATGAGACCCCCTATGTTTGGTCGTTATGCAAACATTGGTTCAACATCATCATGGTTCGAACTATATGCTACCTTTTCCACTTTCATGATGCTTTTAAGAACTGCAATCAATGATCTCATACCCTTAAAACTCAGAACTTTCATCATCATAAAGCTCAAatctttcttcacaaattaccAACCCAATAATCAAGTTTCACTTCAAATTGATCAGTTTTGGGATGCAAATACCAACCATCTTTACTATGCAGCCAAAGAGTATCTTCCTACTAGAATCTCCAGCACTTATAAATCCCTTAAAGTTGGAAAGTTATCCAAACATAACAACATAGTTGTAGCTTttgatggaaaacaaacagtGGTGGATGAGTTTGAAAACATCAAGGTTAAATGGAACCTTGttgaaaaatcaaaaaatgATGATGTTATTGACAATCCCAAAAAAGAATATAAGCATAAgccatcaaaatattttgaggAAAATGGGTTTGTTTTAAGTTTTGATGAAAAGCATAGAGATAAAGTAATGGAGAAGTATCTTCCACATGTTTTAAGCACTTATGAAGCTATACAAGCTGGACATAAAAGTCTTAAGATTCATTCTATGCAATGTGGTCCATGGAAACAAAGTGATTTAAATCATCCTGCTTCATTTGATTCAGTTGCTTTGGAACCTGATTTGAAAAAAGCTATTATTGATGATTTAGATAGGTTTTTGAGGAGGAAAAAGTTGTATAAAAAAGTTGGTAAGCCATGGAAACGTGGTTACTTATTGTATGGTCCACCAGGAACAGGAAAATCTAGTCTTATTGCTGCTATGGCAAAGTATTTGAAATTTGATGTTTATGATTTGGATCTAAGTTCTGTTTATTCTAACTCAGAACTCATGAGAGCTATGAGAGAAACATCTAACAGATCTATTATTGTTTTTGAAGATATTGATTGCAATTCAGAGGTACTTGATCGATCAAAATCAGAAAAGTTTGCAAATTTGGATTCAGATTCTGACTTAATGGCTAAGGTGACAAAGAGCATGCCTAAAAGGTTTACTCTATCTGGTTTGCTTAACTATATGGATGGATTGTGGTCAAGTTGTGGAGAGGAACGAATTTTGATATTTACTACGAACCACAAAGACAAAGTTGATCCAGCATTGTTGCGGCCGGGACGTATGGACATGCATATTCACTTGTCATTTCTTAAAGCCAAGGCATTCAGAATCTTAGCATCTAATTATTTGGAAATTGAAGAACATCATCACCTTCTCTTGGAACAGATTGATGAGCTACTGGAAAAAGTTGAGGTCACCCCTGCAGTAGTGGCAGAGTATTTGTTGAGAAATGAGGATCCTGATGTTGctcttgaagaaatttttaaatttcttaaagaaCTTGACATTCCAAAAGTTATTGTGGATGAAGAATGA 1425 0.3256 MRPPMFGRYANIGSTSSWFELYATFSTFMMLLRTAINDLIPLKLRTFIIIKLKSFFTNYQPNNQVSLQIDQFWDANTNHLYYAAKEYLPTRISSTYKSLKVGKLSKHNNIVVAFDGKQTVVDEFENIKVKWNLVEKSKNDDVIDNPKKEYKHKPSKYFEENGFVLSFDEKHRDKVMEKYLPHVLSTYEAIQAGHKSLKIHSMQCGPWKQSDLNHPASFDSVALEPDLKKAIIDDLDRFLRRKKLYKKVGKPWKRGYLLYGPPGTGKSSLIAAMAKYLKFDVYDLDLSSVYSNSELMRAMRETSNRSIIVFEDIDCNSEVLDRSKSEKFANLDSDSDLMAKVTKSMPKRFTLSGLLNYMDGLWSSCGEERILIFTTNHKDKVDPALLRPGRMDMHIHLSFLKAKAFRILASNYLEIEEHHHLLLEQIDELLEKVEVTPAVVAEYLLRNEDPDVALEEIFKFLKELDIPKVIVDEE 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00775 474 CDD AAA 253 398 - -
Tsu05g00775 474 Gene3D - 208 395 IPR027417 -
Tsu05g00775 474 PANTHER BCS1 AAA-TYPE ATPASE 11 467 - -
Tsu05g00775 474 Pfam Domain associated at C-terminal with AAA 40 134 IPR025753 -
Tsu05g00775 474 ProSitePatterns AAA-protein family signature. 369 387 IPR003960 GO:0005524|GO:0016887
Tsu05g00775 474 Pfam ATPase family associated with various cellular activities (AAA) 257 397 IPR003959 GO:0005524|GO:0016887
Tsu05g00775 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 449 IPR027417 -
Tsu05g00775 474 Gene3D - 396 464 - -
Tsu05g00775 474 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 11 467 - -
Tsu05g00775 474 SMART AAA_5 252 401 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00775 Tsu-Chr5 6533050 6535242 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00775 254 397 Calmodulin-binding Proteins AT3G56690 31.126 1.10e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00775 - K08900 gmx:100787726 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00775 05 6533050 6535242 Tsu05g00775 05 6533050 6535242 ECH