Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00759 ATGGAAGAGATTACCAATCTCTTGTTAGATCTTCAGCAACTGAATGAAGAGACAAAATCAACTCACAGTGCAAAAGTTCTGAGAGGGTTAAGAGACAGAATGGATTCTGATATGGTTGCCGTGTTACGCAAGGCGAATGTAATCAAGGCAAGGTTAGAGGCTCTTCAGAAATCCAACATTGCGAATCGAAAGATATCAGAATGCTACAAAGAAGGAAGTCCTATTGATAGAACAAGAGTTTCTGTCACTAATGGTTTGAAGGTCAAACTTAGAGACATGATGAATGATTTTCAGGCCTTAAGGGATAAGATTGTGTTGGATCATAAGGAAGATTTGAAGAGAAGGTACTATACTGTAACGGGCGAGGTACCTAGCGATGAGGTTATGGAGAAAATGATATCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACTGATGCTGATATGGGAACTCAAGTTAGGCATGAAGCTGTGATGGATATTCAGAGAAGTTTGAATAAGCTTCATCAAGTTTTTCTTGATATGGCTATTTTGGTTGAGACTCAAGGAGAAAAAATTGACAACATTGAGGATAATGTGGCCAATGCTGGTAACTACATTCATGGTGGAACTAATAGTCTTTATCATGCAAGCCAGATGAAGAAGAGGAACAGGAAATGGCTCTATTGGGTTTTAGCTGTTTTGTTGATTGTAATTCTGGCATTGGACAAGATTAGGTTCCTTTCCCTCACTGATAAGGAAATTTTTGGTGAAGGGAACAACGCCAAGCTTGAAATTCAGTTCGGTACCATCGAGAAACCACCAGGCTCGGTTTGGATTGTGTCAGAGTTGAAAGGGAGGAATGAGGATTGTGAACATCTTGAGGTTTTACAACCTGGTCATTTTCAAGCAAAAGAAGAGAGTTCCATAGAAGGTACAATCCTCCATGGATCTCTGAGTCCATTCCCATCAACCCTTTATGATCATATAGTTTTGAGGAATGCATTTGAGACATCCTTGCCACCCTCAACTGGTGAGCTCCAAAGGACAGAATGCTTAAGATCGCTCGGAGAGATTTCTGTTACACTTGCGGAGAGGCCTGCTAGAGGAAGTGAAAGAAATTATGGAGCTTTTAAAATCGACATGGCGCATTTTGGGAATTACAAAGACTATCCACCATACTTGTATAAGCCTGCTGCTAGGATTGTTAAAATTGCAATAATAGGTATTCTAGGAGCATGCTTTGGACTTGATTTCTTGACAACCCAAGGTGTTGTGTTTTTGGAGCTACCTCAGTGCCCATTGCCCAACTCTGATGCTTCAGATCTTCAGCAACTGAATGAAGAGACAAAATCAACTCACAGTGCAAAAGTTCTTAGAGGGTTAAGAGACAGAATGGATTCCGATATGGTTGCCGTGTTACGCAAGGCGAATGTAATCAAGGCAAGGTTAGAGGCTCTTCAGAAATCCAACATTGCGAATCGAAGCATATCAGAATGCTACAAAGAAGGAAGTCCTATTGATagaacaagaatttttgtcacTAATGGTTTGAAGGTCAAGCTTAGAGACATGATGAATGATTTTCAGTACTTAAGGGATAAGATTGTGTTGGAATTTGCATTGTTGGGTTTGAAAAATGGAGGCAACTTGTTATGGAAGATCAAATTCTAG 1656 0.3986 MEEITNLLLDLQQLNEETKSTHSAKVLRGLRDRMDSDMVAVLRKANVIKARLEALQKSNIANRKISECYKEGSPIDRTRVSVTNGLKVKLRDMMNDFQALRDKIVLDHKEDLKRRYYTVTGEVPSDEVMEKMISGSLKVEFLAGKTDADMGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKIDNIEDNVANAGNYIHGGTNSLYHASQMKKRNRKWLYWVLAVLLIVILALDKIRFLSLTDKEIFGEGNNAKLEIQFGTIEKPPGSVWIVSELKGRNEDCEHLEVLQPGHFQAKEESSIEGTILHGSLSPFPSTLYDHIVLRNAFETSLPPSTGELQRTECLRSLGEISVTLAERPARGSERNYGAFKIDMAHFGNYKDYPPYLYKPAARIVKIAIIGILGACFGLDFLTTQGVVFLELPQCPLPNSDASDLQQLNEETKSTHSAKVLRGLRDRMDSDMVAVLRKANVIKARLEALQKSNIANRSISECYKEGSPIDRTRIFVTNGLKVKLRDMMNDFQYLRDKIVLEFALLGLKNGGNLLWKIKF 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00759 551 Gene3D - 145 239 - -
Tsu05g00759 551 PANTHER SYNTAXIN-112 435 534 - -
Tsu05g00759 551 PANTHER SYNTAXIN-112 1 237 - -
Tsu05g00759 551 Coils Coil 1 21 - -
Tsu05g00759 551 SUPERFAMILY t-snare proteins 4 204 IPR010989 GO:0016020|GO:0016192
Tsu05g00759 551 PANTHER SYNTAXIN 1 237 IPR045242 -
Tsu05g00759 551 SMART tSNARE_6 144 211 IPR000727 -
Tsu05g00759 551 PANTHER SYNTAXIN 435 534 IPR045242 -
Tsu05g00759 551 CDD SNARE_syntaxin1-like 153 208 - -
Tsu05g00759 551 Pfam SNARE domain 185 235 IPR000727 -
Tsu05g00759 551 Gene3D - 1 115 - -
Tsu05g00759 551 SUPERFAMILY t-snare proteins 433 527 IPR010989 GO:0016020|GO:0016192
Tsu05g00759 551 CDD SynN 1 137 IPR006011 GO:0016020
Tsu05g00759 551 Pfam Syntaxin 1 184 IPR006011 GO:0016020
Tsu05g00759 551 Pfam Syntaxin 433 530 IPR006011 GO:0016020
Tsu05g00759 551 SMART SynN_4 1 109 IPR006011 GO:0016020
Tsu05g00759 551 SMART SynN_4 400 535 IPR006011 GO:0016020
Tsu05g00759 551 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 149 211 IPR000727 -
Tsu05g00759 551 Gene3D - 431 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00759 Tsu-Chr5 6384506 6388871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00759 436 534 SNARE and Associated Proteins AT2G18260 56.566 1.30e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00759 K08486 - gmx:112997615 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00759 05 6384506 6388871 Tsu05g00759 05 6384506 6388871 ECH