Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00755 ATGTCGTTGAGAAGCATAGTGCGGGAACTCAAGGAAATGAGGGATGGGATTGGTAATACGTCAAGGAGAGGTGCAGGAAGTAGGGTTTCGCAGCGTCGGACGAAGTCGCACATTGTTCCTGATATCACTTTAACATCACTTGAACCGGTTCAGCAGGGACAATGGGCTAATATACCATCCGAATTGCTTCTTGATATAATTCGGAGGGTAGAAGAGACTGAGACATCTTGGCCTGCTCGTGCTGTTGTCGTTTCTTGTGCTTCCGTGTGTAAATCTTGGAGGGCCGTTACAAAAGAGATTGTCCAGACTCCCGAACAGTGTGGAAAGTTGACATTTCCTATTTCATTAAAGCAGCCGGGTCCTCGTGATTCTCCGATACAGTGCTTCATCAGGCGTGACAGAGAAACTTCTGCATATCTGTTGTACTATGGATTGGTGCCATCGGAAAATGAGACTCATAAGCTGTTATTAGTTGCCAAAAAGATAAGGAGGGCAACTGGCACGGACTTCATCATATCTTTGGTTGCAGATGATTTTTCTCGATCCAGCAATACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATATATGACAGCCAACCTCCACACGGAGCTGGAATTCCACCAAAAAATACTAGGTCTAGTAGGAGATTTCATTCTAAGCAGGTGTCTCCAAGAGTTCCAGCATGTAACTATATCGTTAGCACCATTACCTATGAGCTGAATGTTCTCCGCACGAGAGGGCCAAGAAGAATGAACTGCATCATGAACTCGATACCTGTCTCAGCTGTTCAGGAAGGGGGCACTGCCCCAACTCCTACATCTTTTCCTGAAATTACCGATGAGCATTTTTGTTCTGCGCCAGCAGCACCAGCACCAGCAGCAAAAGGTAAAGGTCCAGTTGGAGATTTAAGCAATTCAACCCTCCCAGTCCCAGAGATGCCGGTACAGAGCCAAGGCCCAGTTGAGTCTCTGGTACTTAAAAACAAGTCTCCACGATGGCATGAGCAGTTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCGGTCAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTGCTGCGGAGCAAGAAAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCGATATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGA 1269 0.4555 MSLRSIVRELKEMRDGIGNTSRRGAGSRVSQRRTKSHIVPDITLTSLEPVQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTKEIVQTPEQCGKLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETHKLLLVAKKIRRATGTDFIISLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPHGAGIPPKNTRSSRRFHSKQVSPRVPACNYIVSTITYELNVLRTRGPRRMNCIMNSIPVSAVQEGGTAPTPTSFPEITDEHFCSAPAAPAPAAKGKGPVGDLSNSTLPVPEMPVQSQGPVESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00755 422 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 422 - -
Tsu05g00755 422 Gene3D Tubby Protein; Chain A 114 422 IPR025659 -
Tsu05g00755 422 Gene3D - 48 103 - -
Tsu05g00755 422 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Tsu05g00755 422 MobiDBLite consensus disorder prediction 205 226 - -
Tsu05g00755 422 Pfam Tub family 116 417 IPR000007 -
Tsu05g00755 422 Pfam F-box domain 55 102 IPR001810 GO:0005515
Tsu05g00755 422 ProSitePatterns Tub family signature 2. 407 422 IPR018066 -
Tsu05g00755 422 PANTHER TUBBY-RELATED 1 422 - -
Tsu05g00755 422 SUPERFAMILY Tubby C-terminal domain-like 104 422 IPR025659 -
Tsu05g00755 422 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Tsu05g00755 422 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Tsu05g00755 422 PRINTS Tubby superfamily signature 400 422 IPR000007 -
Tsu05g00755 422 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Tsu05g00755 422 PRINTS Tubby superfamily signature 379 398 IPR000007 -
Tsu05g00755 422 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Tsu05g00755 422 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Tsu05g00755 422 PRINTS Tubby superfamily signature 186 210 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00755 Tsu-Chr5 6359582 6363103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00755 1 422 TUB Transcription Factor Family AT2G18280 61.939 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu05g00755 Tub 3.6e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00755 K19600 - gmx:100798958 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00755 05 6359582 6363103 Tsu05g00755 05 6359582 6363103 ECH
Tsu05g00755 05 6359582 6363103 Tsu04g03417 04 43389551 43392586 ECH
Tsu05g00755 05 6359582 6363103 Tsu04g03417 04 43389551 43392586 PCT