Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00754 ATGAGAACAACTAGTGGTGAAAAACTGGAGACCCGCTCCTTTCAgGCACATAGTAAAATATGCATAGAACTGATGAATATAGTGGAAAGCATCATGAGGATACTTCCAGACATAGAGGCAGCAAGGCCAAGATGTTCATCAGGAATAGAGTCTCTATGTTCGCTGCACAACTCAATTGAGAAAGCCAGACTACTTCTGCAACATTGTTCCGAATGCAGCAAACTCTACCTGGCTGTGACAGGGGAAACAGTACTTACAAGATGCCTAAAGGCAAAAAAGTCATTAGAACAAAGCTTAATTCCCATTCAGGGTATGGTTCCAGTTCTGTTGGCTGTAGAGGTTTCTAGAATAATCGATGATCTTGAGTGTGCTACATTTGTTCTGGACTATGCTGAAGAAGAGGCTGGGAAAGTTTTAAGAGAACTGCTTCAGCAAGGTAATTCAAACTCAGATTCAGTGGAAGATTTTGAACTTACAGCACTTCAGTTTGCAGCACCAAGACTGAATATAACATCACAAAGGGCCTTATTAGTCGAGAGGCGGTCGATCAGGAAGTTACTAGATAAAATTGGACAAAATGATCCGAGAAAGTGTAAGATCTTGAAATATCTTGCGTATCTATTGAAAAAGCATGGAAACTACATGGTGGCGGGAGAACACATAGACGATTTTTATTCTAGTAGAGAAGAAGCAATTGCAAGGGATAACTCTAGTCGCGATTCTCTACGAAGCAATCGCGTTGAGTCGGAACGTAGCATGAACTATGATCAGAGTAGAACTCAGATGAATCAGTCGGAAAGAGTGACACCGCCTGACGAATATAAGTGTCCAATATCCTTAAGATTGATGTATGATCCTGTTATCATTGCTTCTGGAGTAACATATGAAAGAATGTGGATAAGAAAGTGGTTTAATGAAGGTAAAACTACAtgtccaaaaacaaaaatggaactATCTCATATGACATTGACTCCAAATGTTGCTATGAAGGACATAATATCAAAGTGGTGCGGAAATAACGGTGTCTCCATTCCTGATCCAAGTAGACACACAGAAGATTTTCACTTAATGGATGCTTCACTCACCTCCATCAAGAGTTTGGGAAGTTATTTCAATGATTTGAACTTGCCAATGGATTTTAGCAACATGTCTCTCGGATCATTGGATACGAGTTTTAATTCAGACGCGTCACGAGTTCAGCCCAATCATGACTTGAATTTGATGATGGCCAGGAGTATTGAAAACTCTCAGTCTCACATTCAAAGAGCTCATGTACCAGAGATACATGATACAGATTTGATGCTCTTGCCTACACTTCATGATCTTCAATGGGATTCTCAATGTAAGGTCATTGAAGATTTGAAAGATCATATGAAAAGCAATAGTCAAGCTATTTTGTCTGTGTCAGCTGAAAATTTAGTTGAACCAGTAGTCAAATTTTTGTGCAATGCAAATGATCTGCAGGATGTAAAAGCGCTGAGAGACGGAACTCAGCTGCTGTTGGAATTTGTGAACAATTGCAGAAATGGTATGGCTGACATAAGTGAAGATACCTTCATAAAGTTGGCAAATCTTCTTGATTCAGAAGTGATTGGAGAAGTACTTGCCATAATGGAAGAACTTTCTGGAGATGGAAATAGTAAAGCCAAAATTGCAGCATCCGGTGCACTCACTTCTGTCTTGAAGTTGCTTGGTTCTGATAGCAAAGAGTTCCAACAAAAAGCTATAAGGACAATCTACAATTTGTCCTTCGATGGTGAAGTTTGTCCGCACATGGTATCTCTTAATTGCATCCCAAAATTGCTTCCATTTTTCAAAGACAGATCCGTTTTGCGATActgcatatatatattgaaaaacaTGTGCGACACTGAAGAGGGTAGAAACTCAGTTGTTGAAACTAGGGGATGCATATCTTCCATTGCTGAGATACTTGATACTGGAAGTAATGAGGAGCAAGAACATGCACTTTCTATTCTACAATCTTTATGTTCATGCTCTCAAAGTATGGATTATTGTAAGTTGATTTTGGATGAAGATGAGAATATCATCCCTACTCTTTTCTATATCTCACAGAATGGAAATGATAAAGGAAAGGAAACTGCCTTGGAATTGCTTCAAATTTTGAAAGATGCTAAAGATGTTGAGAATGAAGAAAATAGATCCTCTCAACCAATTACCAACAACACTTCTGGAGAATCAAGCAGTCACACAGAAGAAAATAGATCATCAAAAAGATCGCCATTTCTGAAGAAACTAGGATTGTTCtcgaaaaacaaaaggtga 2286 0.3788 MRTTSGEKLETRSFQAHSKICIELMNIVESIMRILPDIEAARPRCSSGIESLCSLHNSIEKARLLLQHCSECSKLYLAVTGETVLTRCLKAKKSLEQSLIPIQGMVPVLLAVEVSRIIDDLECATFVLDYAEEEAGKVLRELLQQGNSNSDSVEDFELTALQFAAPRLNITSQRALLVERRSIRKLLDKIGQNDPRKCKILKYLAYLLKKHGNYMVAGEHIDDFYSSREEAIARDNSSRDSLRSNRVESERSMNYDQSRTQMNQSERVTPPDEYKCPISLRLMYDPVIIASGVTYERMWIRKWFNEGKTTCPKTKMELSHMTLTPNVAMKDIISKWCGNNGVSIPDPSRHTEDFHLMDASLTSIKSLGSYFNDLNLPMDFSNMSLGSLDTSFNSDASRVQPNHDLNLMMARSIENSQSHIQRAHVPEIHDTDLMLLPTLHDLQWDSQCKVIEDLKDHMKSNSQAILSVSAENLVEPVVKFLCNANDLQDVKALRDGTQLLLEFVNNCRNGMADISEDTFIKLANLLDSEVIGEVLAIMEELSGDGNSKAKIAASGALTSVLKLLGSDSKEFQQKAIRTIYNLSFDGEVCPHMVSLNCIPKLLPFFKDRSVLRYCIYILKNMCDTEEGRNSVVETRGCISSIAEILDTGSNEEQEHALSILQSLCSCSQSMDYCKLILDEDENIIPTLFYISQNGNDKGKETALELLQILKDAKDVENEENRSSQPITNNTSGESSSHTEENRSSKRSPFLKKLGLFSKNKR 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00754 761 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 720 - -
Tsu05g00754 761 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Tsu05g00754 761 MobiDBLite consensus disorder prediction 254 268 - -
Tsu05g00754 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 343 IPR013083 -
Tsu05g00754 761 Gene3D - 435 723 IPR011989 -
Tsu05g00754 761 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Tsu05g00754 761 PANTHER U BOX DOMAIN-CONTAINING 8 720 - -
Tsu05g00754 761 CDD RING-Ubox_PUB 274 315 IPR045210 -
Tsu05g00754 761 Pfam Kinesin-associated protein (KAP) 529 655 - -
Tsu05g00754 761 SUPERFAMILY RING/U-box 263 346 - -
Tsu05g00754 761 MobiDBLite consensus disorder prediction 721 737 - -
Tsu05g00754 761 SMART arm_5 585 623 IPR000225 GO:0005515
Tsu05g00754 761 SMART arm_5 544 584 IPR000225 GO:0005515
Tsu05g00754 761 SMART arm_5 624 665 IPR000225 GO:0005515
Tsu05g00754 761 MobiDBLite consensus disorder prediction 715 761 - -
Tsu05g00754 761 SUPERFAMILY ARM repeat 435 709 IPR016024 -
Tsu05g00754 761 MobiDBLite consensus disorder prediction 235 253 - -
Tsu05g00754 761 MobiDBLite consensus disorder prediction 235 270 - -
Tsu05g00754 761 Pfam U-box domain 271 339 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00754 Tsu-Chr5 6354484 6359033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00754 1 759 U-box Gene Family AT4G36550 36.097 1.53e-140 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00754 - - mtr:MTR_5g020570 1196.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00754 05 6354484 6359033 Tsu05g00754 05 6354484 6359033 ECH
Tsu05g00754 05 6354484 6359033 Tsu04g03415 04 43377889 43383089 ECH
Tsu05g00754 05 6354484 6359033 Tsu04g03415 04 43377889 43383089 PCT