Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00745 ATGCAACATCATCTTTCTTCTTGTAATGGTTCATCTCACGTGATGGGACACTGTACATGTGGTATGTTTCATGGACAAAACAataattcttcttcttcattctcaATGTTATTCTCTAAACCTTATGATGAAACTGTTGATACATATTGTTtcactactactactactactccttcttcttcttcatcttcttcttctgttgATTGTACTCTTTCTCTTGGTACACCTTCTACTCGTTTTAgtgaagatgaagagaaaagAAACCGTTGTTCTGTTAAAAACTTTTGCTGGGATTTACTTACTCCTAAACAGTACAACAGTGTTCAGTCTCAAACAAAGGTAACACGTgcaaacaacaataataataacaacaacaatgatTCTCTTCTTGCTCGTAGATGTGCTAACTGTGACACTACTTCTACACCTCTTTGGAGAAATGGCCCTCGTGGCCCAAAGTCATTGTGCAATGCTTGTGGAATTAGATTCAAGAAGGAAGAGAGAAGAGCTACGGCAGCTGCCACCACACCGACAGCCGCATCAATCGGTGTAATGGAACCAGCTCCAATGTATaaccaccacaacaacaacaattcatGGTATGTACATCCACAAAACCAGAAGACCCAATGCTTCTCTCAGGCAATGAGTAACGAGTTACGCTTCATTGATGAAACTGATCGTGATTCCGAAAATGGCATTCCCTTTCTCTCTTGGAGACTCAATGTCACTGATAGAACAAGCTTTGTTCATGACTTTACTAgatga 768 0.3268 MQHHLSSCNGSSHVMGHCTCGMFHGQNNNSSSSFSMLFSKPYDETVDTYCFTTTTTTPSSSSSSSSVDCTLSLGTPSTRFSEDEEKRNRCSVKNFCWDLLTPKQYNSVQSQTKVTRANNNNNNNNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAATTPTAASIGVMEPAPMYNHHNNNNSWYVHPQNQKTQCFSQAMSNELRFIDETDRDSENGIPFLSWRLNVTDRTSFVHDFTR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00745 255 CDD ZnF_GATA 133 165 IPR000679 GO:0006355|GO:0043565
Tsu05g00745 255 Pfam GATA zinc finger 134 168 IPR000679 GO:0006355|GO:0043565
Tsu05g00745 255 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 174 - -
Tsu05g00745 255 ProSiteProfiles GATA-type zinc finger domain profile. 128 164 IPR000679 GO:0006355|GO:0043565
Tsu05g00745 255 PANTHER GATA TRANSCRIPTION FACTOR 18 2 254 - -
Tsu05g00745 255 SMART GATA_3 128 182 IPR000679 GO:0006355|GO:0043565
Tsu05g00745 255 ProSitePatterns GATA-type zinc finger domain. 134 159 IPR000679 GO:0006355|GO:0043565
Tsu05g00745 255 PANTHER GATA TRANSCRIPTION FACTOR 18 2 254 IPR044272 GO:0003700|GO:0009908
Tsu05g00745 255 Gene3D - 130 210 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00745 Tsu-Chr5 6294778 6296433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00745 19 255 C2C2-Gata Transcription Factor Family AT3G50870 42.373 5.16e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu05g00745 GATA 6.3e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00745 - - gmx:100790571 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00745 05 6294778 6296433 Tsu05g00745 05 6294778 6296433 ECH
Tsu05g00745 05 6294778 6296433 Tsu04g03402 04 43262346 43263389 PCT