Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00735 atGGGTGACAAGAAGAACAATGTGATGAACGAAGATCCTCCTGTAGAGTCACCAACTTCGGTTCTAGAAGAAGAGgAAGTGGAAGTGAAATCGGAGGAAGAGGTGGTTGCAGATGATGGGTCATCTTCTCTTGTGTCGAAATCAATGGCGGAGGAGGAAGAGAAGTTACTTAAAGCTCGTGCTAAAGAAGAAGACGAACCTAATGAGGAGGCGCTGGAACTTAATGATACACAGTTTAATAAGTTGGATGAACTTTTAACCCAGACTAAACTCTACTCAGAGTTTCTTTTGGAGAAAATGGATGATATCACAATGAATCCGGGTGAACAAGAGAATGAGGACGAGGAAGAGAGCCAGCCGAGTGTGAAAAAGAAGGGCCGTGGAGCAAAACGAAAGGCGGCTAAACAATGCAATACTAGGAAAGCCAAAAAGGCAGTTGAAGCCATGATTACAAGATCTAAAGAAAATCTGAAGGCTGAAGATGTGAATTTGACTGAAGAAGAAAGAACTGCGAAAGAGCAGAAGGAGTTGATGCCTTTACTAACTGGTGGAAAATTGAAGTCTTATCAATTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTAGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACAATTGGCTTTATTTCTCATCTAAAATCAAAAGGATTGGATGGGCCATATATGATCATTGCTCCTCTATCAACCCTCTCCAATTGGGCGAATGAGATATCTAGGTTTACACCATCGCTCCCTGCTGTTATCTACCATGGTAACAAAAGTCAGAGAGATCAAATCAGAAGGAAACATATGCCTAGAACAGTTGGCCCAAAATTTCCCATAGTAATAACTTCATATGAGATTGCGATGAATGATGCTAGGAAATGTTTCGGGTCATACAGTTGGAAATATCTTGTTGTGGACGAGGGACACAGGCTCAAAAACTCAAATTGCAAATTAGTGAAGATGTTGAGATACATTAAAGTTGAAAATAAGCTTCTTTTGACTGGGACACCTCTCCAGAATAATTTGGCAGAGCTTTGGTCATTGCTGAACTTCATCTTACCTGATATATTCTCATCACTTGAAGAATTTGAGAAATGGTTTAATCTGTCAGGAAAGTGCACTAATGGAGCAacaatggaagaaatggaagagaaaagaagaaatcaaGTAGTGGCCAAGCTTCATGGAATTCTTAGGCCATTTCTTTTGCGTAGGATGAAGTCTGATGTTGAGCTAATGTTGCCACGGAAAAAAGAGATCATTATTTATGCTAACATGACTGAGCATCAGAAGAGCTTGCAGGATCATTTAATTAACGAGACACTGGGGAAATATTTGGACGCAAAACTATCAGTCGGACGTGGTGCGACGAAGCTTAATAATCTGGTTATTCAACTTAGGAAAGTCTGTAACCATCCCGATCTCTTAGAATCAGCCTTTGATGGTTCATATTTGTATCCTCCGGTGAATGAGATAATCGAACAATGTGGAAAATTCCACTTGCTCGATAGATTGTTGCAGCGGCTATTTGCACGTAATCACAAGGTTCTGATCTTCAGTCAGTGGACTAAAGTGCTAGATATAATGGATTACTATTTTAGTGAAAAGGGTTTTGAAGTTTGCAGGATTGATGGTTCGGTGAAATTGGATGATAGGAAACGTCAGATCGAGGACTTCAACGATACAAACAGCAAATGCAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATAAACCTCACTTCAGCCGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATCGGTCAAACAAAGCCTGTTCACGTTTACAGGCTCGCAACTGCACAATCAGTAGAGGGTCGAATGTTGAAAAGAGCTTTCAGCAAGTTGAAACTTGAGCATGTGGTGATAGAGAAAGGACAGTTTCATCAAGAGCGTACAACGCCTTCCATTTTGGATGAAATGGAGGGAGAGGATATTTTGGCATTGCTTAGAGATGAAGAAACAGCCGAGGACAAAATGATACAGAAAGATATTAGTGATGAAGACCTAGAGAAGCTTTTGGATCGCAGTGATCTTGTTATCAATAGCTCAACCGATGATAAAGCTCCAGTTAGTACCTTTCCTGTTAAAGGGCCTGGATGGGAGGTGGTGATTTCTGCTGCGTCTGGTGGCATGCTTTCCACCCTTAACAGCTAA 2259 0.4042 MGDKKNNVMNEDPPVESPTSVLEEEEVEVKSEEEVVADDGSSSLVSKSMAEEEEKLLKARAKEEDEPNEEALELNDTQFNKLDELLTQTKLYSEFLLEKMDDITMNPGEQENEDEEESQPSVKKKGRGAKRKAAKQCNTRKAKKAVEAMITRSKENLKAEDVNLTEEERTAKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFISHLKSKGLDGPYMIIAPLSTLSNWANEISRFTPSLPAVIYHGNKSQRDQIRRKHMPRTVGPKFPIVITSYEIAMNDARKCFGSYSWKYLVVDEGHRLKNSNCKLVKMLRYIKVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFEKWFNLSGKCTNGATMEEMEEKRRNQVVAKLHGILRPFLLRRMKSDVELMLPRKKEIIIYANMTEHQKSLQDHLINETLGKYLDAKLSVGRGATKLNNLVIQLRKVCNHPDLLESAFDGSYLYPPVNEIIEQCGKFHLLDRLLQRLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDDRKRQIEDFNDTNSKCRIFLLSTRAGGLGINLTSADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTTPSILDEMEGEDILALLRDEETAEDKMIQKDISDEDLEKLLDRSDLVINSSTDDKAPVSTFPVKGPGWEVVISAASGGMLSTLNS 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00735 752 MobiDBLite consensus disorder prediction 125 139 - -
Tsu05g00735 752 MobiDBLite consensus disorder prediction 18 33 - -
Tsu05g00735 752 Coils Coil 154 174 - -
Tsu05g00735 752 PANTHER SNF2/RAD54 HELICASE FAMILY 11 751 - -
Tsu05g00735 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 416 IPR027417 -
Tsu05g00735 752 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 512 668 IPR001650 -
Tsu05g00735 752 PANTHER BNAC07G16550D PROTEIN 11 751 - -
Tsu05g00735 752 MobiDBLite consensus disorder prediction 48 67 - -
Tsu05g00735 752 MobiDBLite consensus disorder prediction 105 142 - -
Tsu05g00735 752 Pfam SNF2-related domain 189 486 IPR000330 GO:0005524|GO:0140658
Tsu05g00735 752 MobiDBLite consensus disorder prediction 1 77 - -
Tsu05g00735 752 Pfam Helicase conserved C-terminal domain 512 622 IPR001650 -
Tsu05g00735 752 SMART helicmild6 538 622 IPR001650 -
Tsu05g00735 752 SMART ultradead3 182 374 IPR014001 -
Tsu05g00735 752 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 366 IPR014001 -
Tsu05g00735 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 708 IPR027417 -
Tsu05g00735 752 CDD SF2_C_SNF 498 632 - -
Tsu05g00735 752 Gene3D - 187 417 IPR038718 -
Tsu05g00735 752 Gene3D - 422 723 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00735 Tsu-Chr5 6189317 6195095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00735 172 643 RAD5 or RAD16-like Gene Family AT3G16600 24.394 9.87e-32 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu05g00735 SNF2_N 5.9e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00735 K19001 - gmx:100777687 1183.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00735 05 6189317 6195095 Tsu05g00735 05 6189317 6195095 ECH