Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00718 ATGTACAACACAATGAACCATCAAGATCAAATGATGCTCATGTCTCAACTATTCCCAAGTGCTTATACTGAAGAAATTCCTCAACAAggAGAGAAGAAGCCGCGACGAAGGCGTACTAAGAAGATCAAAGGAGATAGTGttaatgaaatgaataaaaagagaaaattaactGATGAACAAGTTAATTTGCTTGAAGAAAACTTTTCAAATGAACATAAACTTGAATCAGAAAGGAAAGATAAGCTTGCAATGGAGCTTGGTTTGGATCCAAGACAAGTAGCTGTTTGGTTTCAAAATAGAAGAGCTAGGTGGAAGAACAGAAAACTTGAAGAAGAATACAATAATCTTAAGAAATTTCATGAATCTACTATGCTTGAGAAATGTCTCCTAGAAACTGAGGTATTGAAGTTAAGAGAACAACTTTGTGAGGCAGAGAAGGAAATTCAGAGGCTTAGGGAGCCTATTGAAAATGTCCCAAGCAATAGTTCAAGTACTTCATCAATGTCACAATCAATGGAAGTAGTGGACCCTCCATTTTTGGGTGAATTTGGAGTTGATTATggatatgatgatgatgtgtttTTTGTGCCTAATGAGACACATTACTTCAATGGCATGGAATGGGTTACTTTGTACATCtaa 642 0.3364 MYNTMNHQDQMMLMSQLFPSAYTEEIPQQGEKKPRRRRTKKIKGDSVNEMNKKRKLTDEQVNLLEENFSNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNRKLEEEYNNLKKFHESTMLEKCLLETEVLKLREQLCEAEKEIQRLREPIENVPSNSSSTSSMSQSMEVVDPPFLGEFGVDYGYDDDVFFVPNETHYFNGMEWVTLYI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00718 213 ProSiteProfiles 'Homeobox' domain profile. 47 107 IPR001356 GO:0003677
Tsu05g00718 213 SUPERFAMILY Homeodomain-like 52 115 IPR009057 -
Tsu05g00718 213 ProSitePatterns 'Homeobox' domain signature. 82 105 IPR017970 GO:0000981|GO:0006355
Tsu05g00718 213 SMART HOX_1 50 111 IPR001356 GO:0003677
Tsu05g00718 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 212 - -
Tsu05g00718 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 212 IPR045224 GO:0003700
Tsu05g00718 213 CDD homeodomain 52 108 IPR001356 GO:0003677
Tsu05g00718 213 PRINTS Lambda-repressor HTH signature 78 87 IPR000047 GO:0003677
Tsu05g00718 213 PRINTS Lambda-repressor HTH signature 87 103 IPR000047 GO:0003677
Tsu05g00718 213 Coils Coil 99 119 - -
Tsu05g00718 213 Gene3D - 44 116 - -
Tsu05g00718 213 MobiDBLite consensus disorder prediction 24 56 - -
Tsu05g00718 213 Coils Coil 47 67 - -
Tsu05g00718 213 Pfam Homeodomain 52 106 IPR001356 GO:0003677
Tsu05g00718 213 MobiDBLite consensus disorder prediction 42 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00718 Tsu-Chr5 6072036 6074490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00718 1 213 Homeobox Transcription Factor Family AT4G36740 54.091 6.54e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Tsu05g00718 Homeodomain 8.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00718 K09338 - gmx:100809616 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00718 05 6072036 6074490 Tsu05g00718 05 6072036 6074490 ECH