Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00703 ATGTTCGGAGAGGGGCCTAAAATTCGAGGAAAAACCTGGAAACTTCCACAAGCTTTCTCTTACCATCATAATCAAAATTGGGGCTTTTCTTCACTCCAAATCAACAATCACAATTCCAATCCAACAATTTTCCATCTTCTCCGATCAATTCCAATTCTATCTTCCTCGACGCAATCATCCGAGGAATTAGACAAAAATGTCGAGTGGTTTTGGAGAATCGACAATACCGTCTCAAGCGAATCCATCGATCCAGTGATTACACTTTGTGGCCATTTGTTCTGTTGGCCATGTCTTTATAAGTGGTTACATCATCATTCTCAATGTCAAGAATGTCCTGTTTGTAAAGCACTTATTGAAGAAGAGAAACTGGTTCCTCTTTATGGTAGAGGAAAGTCACAAAGTGATCCGAGGAATAAATCGTATCCTGGAATGGAGATTCCTCGCCGTCCTTCTGGACAGAGGCCACAAACGGCGGAGGCTaatcttcctcctcctcctcctgaTGTGAATTATCACACTGGATTGGCTGGATTTGGATTGATGGGTGGGTTTATTCCGATGGCAACTGCTACATTTGGAAATTTTGCACTTTCGACGGGTTTTGGTGGGTTTGGCGGGTTTATCCCGTCACTCCTCAATATTCACTTTAATGGTTTTCAGGATGCTACTGTTTATGGGACAACGTCTGGTTATCCCGTTGGGTTTAACGCGTTTCACAGTGGGAATACTAGAGATTTTAATTCACAGGCTACGGGACAAGTGCAGCGACAGGAGGATAATGTTTTGAAGAATTTGCTTATGTTGATTGGATTTCTTGTCCTTATTACAGTTATTTTTGTTATGTAA 846 0.4043 MFGEGPKIRGKTWKLPQAFSYHHNQNWGFSSLQINNHNSNPTIFHLLRSIPILSSSTQSSEELDKNVEWFWRIDNTVSSESIDPVITLCGHLFCWPCLYKWLHHHSQCQECPVCKALIEEEKLVPLYGRGKSQSDPRNKSYPGMEIPRRPSGQRPQTAEANLPPPPPDVNYHTGLAGFGLMGGFIPMATATFGNFALSTGFGGFGGFIPSLLNIHFNGFQDATVYGTTSGYPVGFNAFHSGNTRDFNSQATGQVQRQEDNVLKNLLMLIGFLVLITVIFVM 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00703 281 MobiDBLite consensus disorder prediction 128 166 - -
Tsu05g00703 281 PANTHER RING ZINC FINGER PROTEIN-RELATED 81 279 - -
Tsu05g00703 281 SUPERFAMILY RING/U-box 82 127 - -
Tsu05g00703 281 ProSitePatterns Zinc finger RING-type signature. 89 98 IPR017907 -
Tsu05g00703 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 81 279 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tsu05g00703 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 126 IPR013083 -
Tsu05g00703 281 ProSiteProfiles Zinc finger RING-type profile. 89 115 IPR001841 -
Tsu05g00703 281 Pfam zinc-RING finger domain 80 115 IPR001841 -
Tsu05g00703 281 CDD RING-HC_AtRMA_like 83 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00703 Tsu-Chr5 5930254 5933453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00703 75 279 C3H Transcription Factor Family AT2G23780 51.442 2.47e-67 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00703 K10666 - gmx:100814783 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00703 05 5930254 5933453 Tsu05g00703 05 5930254 5933453 ECH