Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00700 atGGTATCTCAAGGTACCAATTTCATCCTATGGCATTTTGTTTTGGCCATTGTGATTGTAATCTTTTTCACACCGAAACTTAGTTCTGCAAAACAATCCAAGTTAATCGGTATGAAAATGAATATGATTGATAATTGTTGGAGACCAAATCTTGAATGGAGGAGGCATAGACAACAACTAGCAACTTGCTCTGTAGGCTATGttggaaaaatgaaaaacaacattGGTAATGACCTCATATATTATAAAGTTACTGACCCAAGTGACGATCCCACAAATCCCAAACCTGGTACTTTGAGATACGGAGCATCTGTAATTCAAGGTAAAGTGTGGATCACATTTCAAAAAGACATGAATATTAGACTCATCAAACCCCTTCTCATTAGTAGTTTCACTACCATTGATGGTCGCGGCGTCAAAGTCCACATTGCTAATAATGCATGCTTGATGATATTCAAGGCCACCAACATAATAATTCATAGCATTAGAATTCATCACTGCAAAGCTCAAGCAGCGGGGATGGTTATGGGGCCTAATGGAAAGGTAATTCATTTGGGTCCAGTAGATGGAGATGCAATTAGATTGATCACAGCTTCAAAAATTTGGATTGATCATAATACACTTTATGAATGTGAAGATGGTCTTCTTGATGTCACAAGAGGTTCTACTAATGTCACTATATCCAATAATTGGTTTAGAGAACAAGACAAGGTTATGCTTCTTGGTCATGATGATGGCTATGTGAGAGACAAAAATATGAAGATTACCGTTGTGTACAATCATTTTGGACCTAACTGCAACCAACGGATGCCTAGGATTCGCCATGGATATGCACATGTAGCCAACAATCTTTACTTTGGGTGGATGCAGTATGCCATTGGTGGAAGTATGGGGCCTAGTCTCAAAAGTGAGGCTAACCTCTTCATAGCACCAAAAGTTGGGAATAAAGAGATAACATGGAGAAAAATTGGCGGTACGAATGGAGACAAATGGAAATTTTATTCGGTTAGGGATGCATTTGAAAATGGAGCCTCTTTCGTGGAAACAAAAGGAGGACTTGTGCCAAAGCCGAATTATAGTAAAGAACAAAGTTTTAAAGTTGTTGATGTCAAATCTGTTAGATCATTGACAAGATCATCAGGTGCACTTAAATGCAGTAGGACCTCTATATGTTGA 1176 0.3784 MVSQGTNFILWHFVLAIVIVIFFTPKLSSAKQSKLIGMKMNMIDNCWRPNLEWRRHRQQLATCSVGYVGKMKNNIGNDLIYYKVTDPSDDPTNPKPGTLRYGASVIQGKVWITFQKDMNIRLIKPLLISSFTTIDGRGVKVHIANNACLMIFKATNIIIHSIRIHHCKAQAAGMVMGPNGKVIHLGPVDGDAIRLITASKIWIDHNTLYECEDGLLDVTRGSTNVTISNNWFREQDKVMLLGHDDGYVRDKNMKITVVYNHFGPNCNQRMPRIRHGYAHVANNLYFGWMQYAIGGSMGPSLKSEANLFIAPKVGNKEITWRKIGGTNGDKWKFYSVRDAFENGASFVETKGGLVPKPNYSKEQSFKVVDVKSVRSLTRSSGALKCSRTSIC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00700 391 Pfam Pectate lyase 128 308 IPR002022 -
Tsu05g00700 391 PANTHER PECTATE LYASE 18-RELATED 2 388 IPR045032 GO:0030570
Tsu05g00700 391 PANTHER PECTATE LYASE 2 388 - -
Tsu05g00700 391 Gene3D - 40 384 IPR012334 -
Tsu05g00700 391 SMART amb_all 117 314 IPR002022 -
Tsu05g00700 391 SUPERFAMILY Pectin lyase-like 81 387 IPR011050 -
Tsu05g00700 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Tsu05g00700 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Tsu05g00700 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Tsu05g00700 391 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Tsu05g00700 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Tsu05g00700 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Tsu05g00700 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00700 Tsu-Chr5 5880947 5891926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00700 71 318 Polysaccharide Lyase AT5G09280 70.565 1.52e-139 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00700 K01728 - gmx:100780437 665.611