Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00690 ATGTATTTTGTTACCTACTTATGTGGCATATTTTCAGGGAAAAAAGGAATAATTTTGTGTAATATGGGTTGGTTTACCAAGTTTCTCAATGGCTCTAATCATAGAATTTCAAGAGGACAATACAACGGCAAACATGGTGATGATAGAGTCTGGGATAATCATCTTAGTTCAGTGGATGATTTGACGGATGTCGAGAAAGAAGACATCGACCGTGCAATTGCACTGTCTCTATCAGAGGAGGATCTGAAAGGGAAAAAAGTTGTTGTTGAGGATGATTCTCAGTCTGAAAAAGACGAACAACTTTGTAAAATTGATGAGGAAGATGAGAATGTTGGTAAAATTCGACCAGATGAAGATGAACTGTTGCTAGCTAAAATTCAGCAGGATGAAAATGAACGACGTGCCAAAGATCAACTTGAGGAAGATGAGCAACTTGCAAAGGCAATTCAATTAAGTTTGACCATTGATTCTCCTCATCGACGTGGCAATGATTCTTTATCTCAACCTTCTCCCCACGTCTTTCCACCTGGATTCAGAATCTGTGCCGGATGCAATGCGGAGATTGGCCATGGTAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCACAATGCTTCGTCTGTCATGCTTGCCATCTGCCTATCACTGATTTTGAGTTTTCCATGTCTAGCAACCGTCCTTACCATAAATCCTGCTACAGGGAGAAGCATCATCCAAGATGTGATGTTTGCAAGAATTTTATCCCAGCTAATTCAGCTGGACTCATTGAGTATAGAGCTCATCCTTTCTGGATACAAAAATACTGCCCAACACATGAGCTTGACCGCACTCCTCGTTGTTGTAGCTGTGAAAGAATGGAGCCAAAGGATTCAAAATATCTTTTGCTCGATGATGGTCGAAAACTATGTCTTGAGTGTCTAGACTCAGCAATTATGGATAGTCATGAATGTCAACCTCTCTACCTTGAAATACTAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAGTTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAACGGTCATCACCATTTACCTGAAACTAGAGGGCTCTGCTTGTCAGAAGAACAAACTGTGACCACCATTTTAAGAAGACCAAGGATAGGGGCAGGACATCGAGCCACTGACATGATAACCGAGCCTTATAAACTGACACGTCGATGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGTTGTTGACAGGATCAATCCTAGCTCATGAGATAATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAACCTAAGTCCAGAAGTTGAAGAAGGAATATGCCAAGTTTTGGCTCATATGTGGTTAGAATCAGAGCTATATTCTGGATCTGGGAATAATAACACACCGTCttcgtcttcatcttcatcatcggCTATGCCTCCGCCCTCTTCTGCATCATCAAAGAAGGGTAAACGGTCTGATTTTGAGAAGAAACTCGGCGAATTTTTCATACACCAGATTGAGTCAGATACATCGCCGGCCTATGGAGATGGGTTCAGATTGGGTAACCAGGCAGTACTTAAGTATGGGCTCAAAAGTACCCTCGATCATATCCATTTGACAGGAACTTTTCCTTGTTGA 1656 0.4124 MYFVTYLCGIFSGKKGIILCNMGWFTKFLNGSNHRISRGQYNGKHGDDRVWDNHLSSVDDLTDVEKEDIDRAIALSLSEEDLKGKKVVVEDDSQSEKDEQLCKIDEEDENVGKIRPDEDELLLAKIQQDENERRAKDQLEEDEQLAKAIQLSLTIDSPHRRGNDSLSQPSPHVFPPGFRICAGCNAEIGHGRFLSCMGGVWHPQCFVCHACHLPITDFEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPANSAGLIEYRAHPFWIQKYCPTHELDRTPRCCSCERMEPKDSKYLLLDDGRKLCLECLDSAIMDSHECQPLYLEILEFYEGLNMKLEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGHRATDMITEPYKLTRRCEVTAILVLYGLPRLLTGSILAHEIMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGSGNNNTPSSSSSSSSAMPPPSSASSKKGKRSDFEKKLGEFFIHQIESDTSPAYGDGFRLGNQAVLKYGLKSTLDHIHLTGTFPC 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00690 551 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 208 262 - -
Tsu05g00690 551 SMART uim 140 159 IPR003903 -
Tsu05g00690 551 SMART uim 64 83 IPR003903 -
Tsu05g00690 551 ProSitePatterns LIM zinc-binding domain signature. 181 215 IPR001781 -
Tsu05g00690 551 MobiDBLite consensus disorder prediction 469 497 - -
Tsu05g00690 551 CDD LIM_DA1 181 233 - -
Tsu05g00690 551 Pfam Protein DA1 330 545 IPR022087 -
Tsu05g00690 551 PANTHER PROTEIN DA1-RELATED 2 22 550 IPR045218 -
Tsu05g00690 551 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 22 550 - -
Tsu05g00690 551 Gene3D Cysteine Rich Protein 175 238 - -
Tsu05g00690 551 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 206 - -
Tsu05g00690 551 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 140 153 IPR003903 -
Tsu05g00690 551 MobiDBLite consensus disorder prediction 469 493 - -
Tsu05g00690 551 ProSiteProfiles LIM domain profile. 179 239 IPR001781 -
Tsu05g00690 551 SMART lim_4 180 232 IPR001781 -
Tsu05g00690 551 Pfam LIM domain 181 236 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00690 Tsu-Chr5 5764248 5768928 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g00690 DA1-like 1.1e-103 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00690 - - gmx:100817969 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00690 05 5764248 5768928 Tsu05g00690 05 5764248 5768928 ECH
Tsu05g00690 05 5764248 5768928 Tsu04g03350 04 42686324 42697106 PCT