Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00689 ATGGGAATagcaacttctccttcttcttccatTATTCACTTGAAGACATACAATAACCATAACCATAAACATAACCAAGAAAGCTTGAAATATTGTTCAAATTCTATGTCCCAAGATTATCAACAAACAATCTTCGGCTTTTCCTCGAATGGATTCGAGAGATCAtcgcagcagcagcagcaacaacaacagaTCCATAGGGATAAAGTAAGGATGCTACAAGGGTTTAATTCAGCACCATTAGTAGAAGGAGAAGAGGAGGAAGAAAGAGGAGGTGTGTATGAAACAACAGGTATGTTATCAGAGATGTTTAATTTTGCTGATCCTTCAACCACAGCTGAATTGTTAGGAACCGCCACTTTTCGGTCTTCTTCAAGACAGCAagaacatcaacaacaaacaacaTCGGAAAATAACAGCTGGTATGGTAATAGTAGACAAGGGATGCAGCAGCAGCATCAGCACCAGATGTCAAACATTAACGCATCTGCTGCTGATTCAGCTGCTGCCATGCATCTTTTTCTCATGAACCCTACtcaaacaacatcatcatcttcacctCCTCATCAAAATTCTTCAACTCTTCACATGTTACTACCTAACCCTCCCTCTAATAATTCCTTACAAGGTTTTCCAAATTCCGGTAATTTCGGACAATTCACATCATGGGGTAGTACTAGTAGTACTACTCAAGAAGGTCAAGGCCATGGACATGGACAAGGTCAAGGTCAAGGTCAAGGTCTTTCATTATCACTATCTTCTTCATTGGAAGCTGCAAAAGCTGAGGAGGAATTGAGAATGAGAGGTGGAGGAGAAAGTGGTaattttatgtataataatTACATTAATATTCAtggtggaggaggaggaggaccatcttcatcatcatatcCTCCGTACAAAATAAATCATCAACAAGCATTGAATTTACAATTGcaaggaggaggaggagggaCCAATATTGGAGGATATCAATTATTACAAAGTCATCAAGGAATTGGAAGTGTAGTAAATGttttaagaaattcaaaatatatgaaAGCAACTCAAGAATTGCTTCAAGAGTTTTGTAGTGTTGGAAGAGGTCATTTTATTAAGAAGAATAAGTTTAATTCAAACCCTAATAATAATTCCTCCTCCAATGTTGCTGGTGGTGATACCATTCCTTCATCAAAAGACCATCCTCCTCTTCCTTTGTCAGCTGGTGATAGGATTGAGCATCAAAGAAGGAAGGTCAAACTTCTAGCCATGCTTGATGAGGTGGATAGGAGATACAATCACTACTGTGAACAAATGCAAATGGTAGTGAACTCATTTGATCTAATGATGGGTTTTGGAGCAGCAACTCCATACACAGCATTAGCTCAGAAAGCGATGTCTCGACATTTTCGGTGTCTAAAGGATGCAATAACAGTACAATTGAAGCAAAGTTGTGAGATACTTGGAGAGAAAGAAGGTGCAGGAGGAGGATTGACAAAGGGAGAGACCCCTAGACTTAAGGTACTTGAACAAAGCTTAAGACAACAAAGAGCATTTCATCAAATGGGAATGATGGATCAAGAAGCTTGGAGACCTCAAAGAGGATTGCCTGAACGTTCTGTCAATGTTTTGAGAGCTTGGCTTTTTGAGCATTTTCTACACCCGTATCCAAGTGATGCAGATAAGCATCTATTGGCACGACAAACTGGGCTATCAAGAAATCAGgTGTCAAATTGGTTCATAAATGCTAGGGTTCGGTTGTGGAAACCTATGGTGGAAGAGATGTACCAACAAGAACTTAATGAAGCTGAGTGTGCAACAGAAGACAAAGAAAGAAACCAAAGTAACAGCAACAGTGGCAACCAAACACAAACACCGCCAACATCATCAGCAAcagaaccaccaccaccaacaccgACAAGAAAAAGATCTGATATCAATCCTCATGAAAATGACCCTTCATTAGTTTCGATCAATAGACAACAATCCTTATCTGAAAATCAAGCAATGCAATCCACCACCGTTTCTGAGGTGGTTCCACCCTTTGATTCAGACATGCCCCCACAACGATCCATGGCGATGGATGATGTGAGTCGATACGGCAGCTTAGTTGCAGAAGATTACGAGACGGGCTCTATTAGTGCTGACATTGGATCATCAACTCTTATTAGATTCGGGCCCACTAGTGGTGATGTGTCACTCACATTAGGGTTACGCCATGTTGGGAATGTGCCCGATGAAACAAATTTCTCTATTAGAGACTTCGGAAGCATGTAG 2256 0.3657 MGIATSPSSSIIHLKTYNNHNHKHNQESLKYCSNSMSQDYQQTIFGFSSNGFERSSQQQQQQQQIHRDKVRMLQGFNSAPLVEGEEEEERGGVYETTGMLSEMFNFADPSTTAELLGTATFRSSSRQQEHQQQTTSENNSWYGNSRQGMQQQHQHQMSNINASAADSAAAMHLFLMNPTQTTSSSSPPHQNSSTLHMLLPNPPSNNSLQGFPNSGNFGQFTSWGSTSSTTQEGQGHGHGQGQGQGQGLSLSLSSSLEAAKAEEELRMRGGGESGNFMYNNYINIHGGGGGGPSSSSYPPYKINHQQALNLQLQGGGGGTNIGGYQLLQSHQGIGSVVNVLRNSKYMKATQELLQEFCSVGRGHFIKKNKFNSNPNNNSSSNVAGGDTIPSSKDHPPLPLSAGDRIEHQRRKVKLLAMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAATPYTALAQKAMSRHFRCLKDAITVQLKQSCEILGEKEGAGGGLTKGETPRLKVLEQSLRQQRAFHQMGMMDQEAWRPQRGLPERSVNVLRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELNEAECATEDKERNQSNSNSGNQTQTPPTSSATEPPPPTPTRKRSDINPHENDPSLVSINRQQSLSENQAMQSTTVSEVVPPFDSDMPPQRSMAMDDVSRYGSLVAEDYETGSISADIGSSTLIRFGPTSGDVSLTLGLRHVGNVPDETNFSIRDFGSM 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00689 751 MobiDBLite consensus disorder prediction 367 401 - -
Tsu05g00689 751 ProSiteProfiles 'Homeobox' domain profile. 520 583 IPR001356 GO:0003677
Tsu05g00689 751 MobiDBLite consensus disorder prediction 596 647 - -
Tsu05g00689 751 SMART HOX_1 523 587 IPR001356 GO:0003677
Tsu05g00689 751 Pfam Homeobox KN domain 540 579 IPR008422 GO:0003677|GO:0006355
Tsu05g00689 751 Pfam Associated with HOX 339 471 IPR006563 -
Tsu05g00689 751 MobiDBLite consensus disorder prediction 605 621 - -
Tsu05g00689 751 SMART prehox3 334 472 IPR006563 -
Tsu05g00689 751 Coils Coil 586 606 - -
Tsu05g00689 751 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 740 - -
Tsu05g00689 751 MobiDBLite consensus disorder prediction 121 161 - -
Tsu05g00689 751 MobiDBLite consensus disorder prediction 660 682 - -
Tsu05g00689 751 MobiDBLite consensus disorder prediction 178 256 - -
Tsu05g00689 751 MobiDBLite consensus disorder prediction 368 387 - -
Tsu05g00689 751 Gene3D - 526 588 - -
Tsu05g00689 751 CDD homeodomain 523 584 IPR001356 GO:0003677
Tsu05g00689 751 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 80 740 - -
Tsu05g00689 751 SUPERFAMILY Homeodomain-like 525 590 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00689 Tsu-Chr5 5742353 5751562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00689 1 570 Homeobox Transcription Factor Family AT4G36870 49.204 4.67e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tsu05g00689 POX 4.7e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00689 - - ccaj:109799862 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00689 05 5742353 5751562 Tsu05g00689 05 5742353 5751562 ECH
Tsu05g00689 05 5742353 5751562 Tsu04g03349 04 42640718 42650281 ECH
Tsu05g00689 05 5742353 5751562 Tsu04g03349 04 42640718 42650281 PCT