Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00688 ATGGAAGTACTTCCTTGTTCTGGTGTTCAATATGCTGGCGAATCTGATTGCCCCCAAAACAGTTTAGGAACAACTTTTGTCTATCAGGAAGAACTTAATTGCCCTGAAAATAGTGAACAAGCTAAATTGGTAGATGGTCAACTAAGTGAATCACTGCATAATATGCAAGGGGTAGAGATTGAAAGGCAAAGTGAGGGCACACTCAATGTTTGCGATTTGTTGACTAATTCGAATTGTCAATGCAATGGAGCTTCATGTTGTAACTGTCAAGTGGAAGATCAAAAAGATTACGGTGGTTTTCATGATTTTGATGAAGACATGATAAATGAACGTTATTTAACCTCTGAAAATTCTCTCTCTGTTGTTGATACAATTGAGAGTGAATCACCAAACACCGGTAAGGAAGGAGACTTGTCATTTTCTGAACCGAAGTGGCTAGAGGGAGATGAATCTGTCGCATTGTGGATCAAGTGGAGAGGGAAGTGGCTGGCTGGTATCCGATGTGCAAGGGCTGACTGGCCATTATCAACTTTGAGAGCCAAGCCAACTCACGACCGAAAGAAATATTTTGTCGTATTTTTTccgcacacaaagatttattctTGGGCAGATACGCTGCTTGTTAGGTCAATTGATGAGTATCCGCATCCTGTTGCACACAAGACTCATCAAGTAGGACTGAAATTGGTAAAGGACTTAACAACTGCACGGCGGTTTATAATGCAAAAGCTAGTTGTTGGCATGCTGAACATCGTTGATCAGTTTCATCTGAATGCTTTGACAGAAACTTCCCGCGATGTGAAGGTCTGGAAGGGATTCGCCATGGAGGCTTCTAGCTGTAATGGTTATTCCGATTTTGGAAGAATGCTTCTAAAGATATACAATAGCATCCTGGGGCCCTACATAAGTGCTGACTGGTTACAGCAATCTTCTCCCTCTTGGGTTGAACGATGTCAGAGTGCAAATAGTGCTGAATCGGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTATGGAATGATGTCAACAATCTTTGGGACTCAGCAATGCAACCGATATTAGGTTCTGAATGGAGAACCTGGAAGCATGATGTAGCGAAATGGTTCTCACCATCACCTCCCGTATCTAGCAGCAAAGACACTCATCGTCAGATTTCTGATGATTCATATCTAACAAACATTCAAGCTTCTAGAAAAAGGCCTAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCAAAAGTGGAATTCAAGGGTTCAGATCACACTATTGCACTTGTGAATGACACTGGTTTCTTTAATAATCAAGACACATTGAGCACATTAACAGCTGAGACTCTTAAACATGAAAATATTAGGAAGGTATCTATCACAAATGATTTGTCCAATAATTTGACCAATAAATGGAATGAAATTGTAGTAGAGGCTGCGGATTCTGATTTCTTGTATACCAAAGAAAATGAATCAACACCAATAAATGAAATGGCTGCTGTAAAATCTGTGGACCCTGGTAGTAAGAATCGACAATGTATAGCTTTTATTGAAACCAAGGGAAGACAATGCGTGAGATGGGCAAACGAGGGAGATGTTTACTGTTGTGTGCATTTGTCCTCCCGTTTTTTGGCTGGCTCAGCAAATGCGGAAAGTCCTGGTCAAAGTGATACTCCTATGTGTGATGGTACAACTGTTGTTGGTACTAAATGCAAACATCGGGCTCTACCTGGATCGTTATACTGTAAGAAACACCGGCCTTATGCTGAAACAGAACAGAACTCAAGTTTAGCCCAAAATACTATGAAGAGGAAGCATGAAGAAAATTATACTGGTTCAGAGAACATGATCTGCAAAGACATGGTATTGGTAAATGCTGAATCTGCACTGCAAATGGTTCCAGTTCCATCCGTTGCCGGTGATTTATTACATGGAGAAAACAACTTGCCTGAGAAGCCAATGCATTCTGAAAAGGGTCATATTGTAATGGATGCTCCGATCTGCATAGGTTCTCCTCCATTTGATAATACGAATCCTTGTAGGGAAGTTCCTAAGCGGTATTCCTTGTACTGCGAAATCCACCTTCCAAGTTGGCTTAAACGAGCAAGAAATGGGAAGAGTAGAATAATATCAAAAGAAGTGTTCTCAGAACTTTTGAGGGGCTGTAGCTCGCGGGAGCAAAAGGTACATCTGCATGAAGCGTGCGAGCTTTTTTACAGGCTATTCAAAAGCATTTTATCACTAAGAAACCAAGTTCCTAAGGATGTTCAATTCCAATGGGCTTTGACTGAAGCCTCTAAAGAAATTGGTGTTGGAGAATTTTTTACAAAGTTGGTTCAAAGTGAAAAAGAGAGAATCAAATCAATGTGGGGATTCAATGATGACATGGATGCACCCTCTGTAATAGAAGAACAACAACCTCTCTTGCTCATGCCACCCCCAATTAATCATAGCTTTGATAATGAGAATGCCATCAAGTGTAAGATATGCTCCACGCAATTTCCTGATGACCAAGCACTCGGTAACCATTGGATGGACAGTCATAAAAAGGAAGCACAATGGCTGTTTAGAGGCTATGCGTGCGCCATTTGTCTGGATTCTTTTACTAATAAGAAACTTCTGGAAACTCATGTTCAAGAGAGACATCATGTGCAGTTTGTCGAACAGTGCATGCTTCTCCAATGCATTCCTTGTGGGAGTCATTTTGGACATAGTGAACAATTATGGCAGCATGTTTTATCAGCTCATCATGCTGATTTTAAGCCATCAAAATCTCCTGAACAGCAAACTTTCTCTACTGGCGAAGGTTCGGCGGTAAAACATGACCAGGGAAATTctacctcttcaaaaaataattctgAGAATCCAGGTGGGTCACGGAGGTTAGTTTGTAGGTTTTGTGGGTTGAAATTTGATTTACTACCTGACCTAGGCAGACATCACCAAGCTGCTCATATGGGGCCCAATCTAGTCAGTAACCGTCCCGCTAAGAGGGGAGTTCGCTATTAcgcatataaattaaaatctgGCAGACTAAGTCGTCCTAGATTTAAAAAAGGTTTGGCAGCAGCAGCATCATTGAGGATGAGAAATAAAGTTAATGCCAATTTAAAGCGAAGCATTCAGGCAACAAAGTCAATTGGCGTGGAAGGAACAGCTGTACAACCTCAAGTAACAGAAACAACAGATATCAGTGGATTGACAAAAAATGAATGTTCAGCTGTTgccaaaattttgttttcagaacttcaaaaaacaaaacctcGGCCTAACAATCTTGACATTTTATCAGTTGCTCGCTTTGCTTGCTGCAAAGTTAATCTTGTAGCCTCTCTGGAAGAGAAATTTGGACTTCTGCCTGAAAAGCTATATTTAAAGGCTGCAAAACTTTGCAGCGATAATAATGTTGTTGCGAAATGGCACCATGAGGGGTTTGTTTGTCCCAGAGGTTGTAACTCGTTGAAGGATCAAGCGTTGCACTCTCCTTTAGCATCTCTTCCTAATGGTTTTGGAATGCCAAAATCTGTAAATTTGTCTGATCTTGCAAATGACGAATGGGAGGTTGATGAGTTTCATTGCATAATCGATACACAAAGTTTACAATTAGGTTCACGGCAAAGGGCTATAGTAGTGTGCGATGACATCAGCTTTGGGAAGGAGTCAGTTCCTGTTATTTGTGTAGTAGACCAGGAACTTCTACATTCTCTAAATGCGGACGGGTCTAATGAACAAGATATAATCACTTCTAAACCTTGGGAGAGCTTCTCCTATGTTACGAAGCCAATAATTGATCAATCCCTCGGTCTTGATTCAGAGAGTCCACAATTGGGATGCGCCTGCTCATATTCTACCTGCTGTCCTGAAACATGTGATCATGTAGACCTTTTTGGTGATGACTATGTTGATGCAAAAGACATATTTGGGAAACCAATGCGTGGCAGATCCCCATATGATCAGAACGGTCGATTAATATTGGAgGAAGGTTACCTTGTCTATGAATGTAACCATATGTGCAGATGCAATAAATCCTGTCCAAATAGAGTATTGCAGAATGGAGTACGAGTCAAATTGGAAGTCTTTAAAACGGAGAAAAAGGGATGGGCAGTAAGGGCCCGAGAAACTATTCTACGAGGAACATTTGTGTGCGAGTACATAGGAGAGGTTTTAGATGTGCAGGAGGCACATAACAGGCGCGAAAGATATGACACAACGAATAGCAGTTATTTCTATGACATCAATGCTCGTGTTAATGATATGAGTAGATTGATTGAGGAACAAGTCCAATATGTGATTGATGCTACTAAAAATGGAAATGTGTCGAGGTTCATCAATCATAGtTGCTCGCCCAATCTTGTGAGTCACCAAGTTCTCGTAGAGAGCATGGATTGTGAGCGTTCACACATTGGTTTTTATGCAAGTCGTGACATTGCTTTGGGTGAAGAACTGACATATGGCTTTCAATATGAGCTTGTGCCTGGCGAAGGATCTCCTTGTTTGTGTGAATCATCAAAATGTAGGGGACGCCTTTACTAG 4527 0.4029 MEVLPCSGVQYAGESDCPQNSLGTTFVYQEELNCPENSEQAKLVDGQLSESLHNMQGVEIERQSEGTLNVCDLLTNSNCQCNGASCCNCQVEDQKDYGGFHDFDEDMINERYLTSENSLSVVDTIESESPNTGKEGDLSFSEPKWLEGDESVALWIKWRGKWLAGIRCARADWPLSTLRAKPTHDRKKYFVVFFPHTKIYSWADTLLVRSIDEYPHPVAHKTHQVGLKLVKDLTTARRFIMQKLVVGMLNIVDQFHLNALTETSRDVKVWKGFAMEASSCNGYSDFGRMLLKIYNSILGPYISADWLQQSSPSWVERCQSANSAESVELLKEELFDSILWNDVNNLWDSAMQPILGSEWRTWKHDVAKWFSPSPPVSSSKDTHRQISDDSYLTNIQASRKRPKLEVRRADTHASKVEFKGSDHTIALVNDTGFFNNQDTLSTLTAETLKHENIRKVSITNDLSNNLTNKWNEIVVEAADSDFLYTKENESTPINEMAAVKSVDPGSKNRQCIAFIETKGRQCVRWANEGDVYCCVHLSSRFLAGSANAESPGQSDTPMCDGTTVVGTKCKHRALPGSLYCKKHRPYAETEQNSSLAQNTMKRKHEENYTGSENMICKDMVLVNAESALQMVPVPSVAGDLLHGENNLPEKPMHSEKGHIVMDAPICIGSPPFDNTNPCREVPKRYSLYCEIHLPSWLKRARNGKSRIISKEVFSELLRGCSSREQKVHLHEACELFYRLFKSILSLRNQVPKDVQFQWALTEASKEIGVGEFFTKLVQSEKERIKSMWGFNDDMDAPSVIEEQQPLLLMPPPINHSFDNENAIKCKICSTQFPDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGHSEQLWQHVLSAHHADFKPSKSPEQQTFSTGEGSAVKHDQGNSTSSKNNSENPGGSRRLVCRFCGLKFDLLPDLGRHHQAAHMGPNLVSNRPAKRGVRYYAYKLKSGRLSRPRFKKGLAAAASLRMRNKVNANLKRSIQATKSIGVEGTAVQPQVTETTDISGLTKNECSAVAKILFSELQKTKPRPNNLDILSVARFACCKVNLVASLEEKFGLLPEKLYLKAAKLCSDNNVVAKWHHEGFVCPRGCNSLKDQALHSPLASLPNGFGMPKSVNLSDLANDEWEVDEFHCIIDTQSLQLGSRQRAIVVCDDISFGKESVPVICVVDQELLHSLNADGSNEQDIITSKPWESFSYVTKPIIDQSLGLDSESPQLGCACSYSTCCPETCDHVDLFGDDYVDAKDIFGKPMRGRSPYDQNGRLILEEGYLVYECNHMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWAVRARETILRGTFVCEYIGEVLDVQEAHNRRERYDTTNSSYFYDINARVNDMSRLIEEQVQYVIDATKNGNVSRFINHSCSPNLVSHQVLVESMDCERSHIGFYASRDIALGEELTYGFQYELVPGEGSPCLCESSKCRGRLY 1508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00688 1508 Gene3D SET domain 1190 1489 IPR046341 -
Tsu05g00688 1508 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1508 - -
Tsu05g00688 1508 Pfam Zinc finger C2H2-type, 3 repeats 859 984 IPR040689 -
Tsu05g00688 1508 ProSiteProfiles Post-SET domain profile. 1492 1508 IPR003616 -
Tsu05g00688 1508 ProSiteProfiles Zinc finger C2H2 type domain profile. 891 920 IPR013087 -
Tsu05g00688 1508 SMART preset_2 1210 1337 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu05g00688 1508 SMART set_7 1353 1491 IPR001214 GO:0005515
Tsu05g00688 1508 ProSitePatterns Zinc finger C2H2 type domain signature. 825 846 IPR013087 -
Tsu05g00688 1508 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1508 - -
Tsu05g00688 1508 ProSiteProfiles Zinc finger C2H2 type domain profile. 857 880 IPR013087 -
Tsu05g00688 1508 ProSiteProfiles Zinc finger C2H2 type domain profile. 960 988 IPR013087 -
Tsu05g00688 1508 MobiDBLite consensus disorder prediction 922 955 - -
Tsu05g00688 1508 Pfam SET domain 1364 1482 IPR001214 GO:0005515
Tsu05g00688 1508 ProSiteProfiles SET domain profile. 1353 1485 IPR001214 GO:0005515
Tsu05g00688 1508 Pfam Pre-SET motif 1213 1345 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu05g00688 1508 Gene3D Classic Zinc Finger 817 888 - -
Tsu05g00688 1508 ProSiteProfiles Pre-SET domain profile. 1274 1350 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu05g00688 1508 SUPERFAMILY SET domain 1203 1498 IPR046341 -
Tsu05g00688 1508 MobiDBLite consensus disorder prediction 918 955 - -
Tsu05g00688 1508 SMART c2h2final6 857 880 IPR013087 -
Tsu05g00688 1508 SMART c2h2final6 823 846 IPR013087 -
Tsu05g00688 1508 SMART c2h2final6 960 983 IPR013087 -
Tsu05g00688 1508 SMART c2h2final6 891 914 IPR013087 -
Tsu05g00688 1508 ProSitePatterns Zinc finger C2H2 type domain signature. 893 915 IPR013087 -
Tsu05g00688 1508 ProSitePatterns Zinc finger C2H2 type domain signature. 962 983 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00688 Tsu-Chr5 5730183 5737636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00688 135 1507 C2H2 Transcription Factor Family AT2G23740 51.116 0.0 1370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu05g00688 Pre-SET 1.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00688 - - gmx:100786757 2363.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00688 05 5730183 5737636 Tsu05g00688 05 5730183 5737636 ECH