Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00651 AtggaacaacaacaacaacaacaacaacaactcaaCTTAGATTTGACTTTAGCTTTAGCCTCTGTTCCTAAAACCGTTTCTCATTTCCTCAACGACGTCGTTTCTCAAACCAAAAATTCATCTCAAAAACTTTCAAACCTTGATGACTTAGTTCATAGATTGGAAGAAGAAACGAACAAAGTTCTCGCTTTCAAACGTGAACTCCCTCTTTGCGTAATCCTCCTTAACAATGCTATAGAAACATTGAaggaggaaaaagaaaaagttaggTTAATGAAAATTGAAGATCCAAAAAACTGTAGTGATAATAAGAAAACTTGGATGAATTCTGTTCAGCTTTGGACTAATGAAAAAAATTcgaAGAATGAAGATGGTGTGTCAAAGAAGAGTAATAATGGTGGAGGGGTATTTATGGAATTTAATGGAAATTCGATGAAGGAGGTTTCTCAAGTTCCAAGCTATAGTTTGGTGTCTGAAGTGAGTCATGGAAATTCAAAgactggtggtggtggtggtagttCTGGATCGTCTTTGTTGCGCATTGAGATACAGAATCAGCCGCAGCCGCCACATCCTTTGCAGCAGAATTCGAGGAAACAAAGGCGAAGCTGGTCGTCTGAGCTTCATCGCCGTTTTGTTGATGCACTTCAACAGCTTGGTGGAGCACATGCAGCCACTCCTAAACAAATTAGGGAAAAGATGCAAGTGGATGGATTAACAAATGATGAAGTGAAAAGTCATTTGCAAAAATACAGGCTTCATGTTCGAAGATTTCCAGTTTCTTCAATTGAGGAAGCGAATAAACTAGCCTTATATATGACTCAAGATCAATATGAAGATACATCGAAGGGAAACATATCAGAAGCTGTTTCACCACAGGGTCCTCTTACTCCTCTTCTCCTTGGAGGATCTGTTAAAGGTCTCTCAAGCCACGGAAGAAACAGTATGGATGCAGATGACGAGCAATCAGATTGCAGGAATTGGAAAGGTGATCAGGAGCAGCTACATGAAGCAGAATAA 1020 0.3618 MEQQQQQQQQLNLDLTLALASVPKTVSHFLNDVVSQTKNSSQKLSNLDDLVHRLEEETNKVLAFKRELPLCVILLNNAIETLKEEKEKVRLMKIEDPKNCSDNKKTWMNSVQLWTNEKNSKNEDGVSKKSNNGGGVFMEFNGNSMKEVSQVPSYSLVSEVSHGNSKTGGGGGSSGSSLLRIEIQNQPQPPHPLQQNSRKQRRSWSSELHRRFVDALQQLGGAHAATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPVSSIEEANKLALYMTQDQYEDTSKGNISEAVSPQGPLTPLLLGGSVKGLSSHGRNSMDADDEQSDCRNWKGDQEQLHEAE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00651 339 Coils Coil 37 67 - -
Tsu05g00651 339 MobiDBLite consensus disorder prediction 313 339 - -
Tsu05g00651 339 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 6 334 - -
Tsu05g00651 339 MobiDBLite consensus disorder prediction 283 339 - -
Tsu05g00651 339 Pfam Myb-like DNA-binding domain 201 252 IPR001005 -
Tsu05g00651 339 MobiDBLite consensus disorder prediction 116 138 - -
Tsu05g00651 339 Coils Coil 72 95 - -
Tsu05g00651 339 Gene3D - 198 255 - -
Tsu05g00651 339 SUPERFAMILY Homeodomain-like 197 257 IPR009057 -
Tsu05g00651 339 MobiDBLite consensus disorder prediction 186 206 - -
Tsu05g00651 339 MobiDBLite consensus disorder prediction 186 201 - -
Tsu05g00651 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 256 IPR017930 -
Tsu05g00651 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 334 IPR044787 GO:0003700|GO:0006355
Tsu05g00651 339 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 254 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00651 Tsu-Chr5 5438173 5440256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00651 4 249 G2-like Transcription Factor Family AT4G37180 41.727 3.86e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu05g00651 Myb_DNA-binding 3.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00651 - - pvu:PHAVU_002G021400g 328.561