Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00649 atgtcatcatcatcaaattctcCATGTGCGGCGTGCAAGTTTCTCCGGCGAAAATGCACACAAGAGTGTGTGTTTGCACCATATTTTCCACCGGACAATCCTCAAAGATTTGCATACGTACACAAAGTTTTCGGCGCGAGTAATGTGGCAAAGCTGTTAAACGAACTTAACGCTACGCAGCGTGATGATGCCGTGAAATCGTTGGCTTATGAGGCCGAGGCGCGGCTTAGAGACCCGGTTTACGGCTGTGTTGGTCTTATTTCACTTCTTCAGCATAAGCTAAGAGCTATTCAAGGTGAACTTAATAATGCTAAAAAGGAACTTGCTACTTATATTGGTCCTCAAGCGCTTCAAGGTATTTCCACAACTATGATtcaacaacagcagcagcatAATAACCCTTTTGGTGGTAATTCTCTTTACCCTTATAACGGTAACATTCCGGCCGTGACCGCGGCTAATCAGATGGTGATTCGTGATCCGCAACCGCCACCGCAGCAGCAGATCTTGGACCCTCATCAATTAGCTGCTGCTGTTGCTGCTAGAGAGCAACAGGAGATTTTTAGGACTTTTGAAAATCAACAGCAACAGCAGGATTTTTTGAGGTTTAGTGGTGGGTTTGATGTGGATTCTGTTTCTAATTCTGCTGGTGGGTTCACACCAGTTTCTGCTGGTGTTGGTGTTGTTGCTGCTGATCAATTGTCTCCTTCTTTAGCTTTGGGATCTTTTGATAATACTTATCACCACATGCAACAATCACCACAAGGACAAGGAGAATCTCATCCTCATCATCAGcaacatcataatcatcatctaCCACTTCAGGCTCAGTTATTGCTTCCTCCTCAACAGAAACAAGCACAACCACAAACTCAACATTCATCATTGACCCATCATCACCAACAACAGACGGAAAGCGAGGAGTGTAGGAGTGTTGGACTTGGTCCTTCTTGTTGA 957 0.4222 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNATQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQHKLRAIQGELNNAKKELATYIGPQALQGISTTMIQQQQQHNNPFGGNSLYPYNGNIPAVTAANQMVIRDPQPPPQQQILDPHQLAAAVAAREQQEIFRTFENQQQQQDFLRFSGGFDVDSVSNSAGGFTPVSAGVGVVAADQLSPSLALGSFDNTYHHMQQSPQGQGESHPHHQQHHNHHLPLQAQLLLPPQQKQAQPQTQHSSLTHHHQQQTESEECRSVGLGPSC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00649 318 Coils Coil 87 107 - -
Tsu05g00649 318 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Tsu05g00649 318 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 282 - -
Tsu05g00649 318 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 3 282 - -
Tsu05g00649 318 MobiDBLite consensus disorder prediction 247 318 - -
Tsu05g00649 318 MobiDBLite consensus disorder prediction 279 299 - -
Tsu05g00649 318 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00649 Tsu-Chr5 5420860 5424414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00649 3 248 AS2 family AT5G66870 50.763 2.25e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu05g00649 LOB 4.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00649 - - mtr:MTR_5g017950 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03290 04 42029149 42029727 Tsu05g00649 05 5420860 5424414 PCT