Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00645 atGGGAATTTGCACTTCAAAATCCACACACTCATCTCGCAATTTCAACACTAACAACCTTCAACTTCCTCCAACTAACTCCGTTACAGTTAACGCCACTTCTCAACCTCAAACAAACTCCGTTAATGGcgaaaaccaaaaccaaaacgaAAACCCTAGTATtgaagaaaatgttaagagATCTCCGTTTTTTCCGTTCTACAGTCCGAGTCCAGCTCATCAATTTTTCTCAAAGATGTCACCGGCgaggaaattttttaagaaaccGTTTCCTCCGCCGTCTCCGGCGAAACATATAAGATCGCTTCTAGCACGGCGACATGGTTCGATTAAGCCTAATGAAGCTTCGATACCGGAAGGTGGTGAAGAGGAGACTGTGTCTGTGGCTGCTCTTGATAAGAATTTTGGATTTTCCAAGCATTTTGGAAGTAAATATGATGTTGGAGATGAAGTTGGGAGAGGACATTTTGGTTATACTTGTGCTGCTAGGTTGAAGAAAGGTGATCTTAAAGGTCAACAAGTTGCTGTCAAAGTGATTCCTAAAGCCAAGATGACTACTGCTATTGCTATTGAGGATGTTAGAAGGGAAGTGAAAATATTGAGAGCTTTGAATGGACATAAGAATCTAGTACGATTCTATGAGGCTTATGAAGATAATGCTAATGTCTATATAGTAATGGAATTGTGTGAAGGTGGAGAGCTGTTGGATAGAATATTATCAAGAGGCGGGAAATACACAGAGGAAGATGCAAAAGCTATCCTGAGACAAATACTGAATGCTGCTGCATTTTGCCATCTACAGGGTGTTGTGCATCGTGATCTTAAACCGGAGAACTTCTTGTTCGCATCCACAGATGAAAACTCAGAGCTGAAGGCCATAGACTTTGGGCTGTCAGATTTTGTTAAGCTAGATGAAAGGCTCAATGATATTGTGGGTAGTGCATACTACGTGGCTCCTGAAGTTCTACATAGAGCTTATAGTACCGAGGCTGATGTCTGGAGTATTGGAGTGATtgcatatattttattatgtggCAGCCGTCCCTTTTGGGCTCGGACTGAGTCTGGCATCTTTCGTACTGTATTGAAAGCAGATCCAAGTTTTGACGAACCTCCTTGGCCTTCTCTATCAGACGAGGCAAGGGATTTTGTTAAGCGATTACTAAATAAAGATCCAAGGAAAAGAATGAGTGCAGCGCAGGCATTAAGTCATCCATGGATTAAAAACTACGAGGATGCGAAGTTGCCTTTGGATATTTTAGTATTCAAGCTCATGAAGACATACATGCGTTCTTCATCTCTAAGAAGAGCTGCTTTAAGGGCTCTGTCTAAGACATTAACTGAGGATGAGCTCGTTTATTTGAAAGAGCAATTTGCACTTTTAGAGCCTAACAAAAATGGCACCATTAGCTTGGAAAATATACAAGCGGCCTTTACGGTAAATGCAACAGATGCTATGAAGGAGTCACGCATTGCTGACTTTCTGGCATCACTTAATGCATTGCAATATAGAAGGATGGGTTTTGATGAGTTCTGCGCAGCTACACTTAGTGTTCACCAACTTGAAGCACTTGACCACTGGGAAAAGCGTGCACGTTGTGCATTTGACATGTTTGAAAAAGATGGAAACAAGGCCATAGTCATCGACGAATTAGCTTCGGAGCTTGGGCTTGGTCCATCTATCCCTGTACATGCTGTTCTTCATGATTGGATTCGGCACACTGATGGGAAGTTAAGCTTCCTTGGATTTGTAAAATTGTTGCATGGCCCATCAAGAAGTCTTGCAAAAGCTCAATAA 1797 0.4035 MGICTSKSTHSSRNFNTNNLQLPPTNSVTVNATSQPQTNSVNGENQNQNENPSIEENVKRSPFFPFYSPSPAHQFFSKMSPARKFFKKPFPPPSPAKHIRSLLARRHGSIKPNEASIPEGGEEETVSVAALDKNFGFSKHFGSKYDVGDEVGRGHFGYTCAARLKKGDLKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHKNLVRFYEAYEDNANVYIVMELCEGGELLDRILSRGGKYTEEDAKAILRQILNAAAFCHLQGVVHRDLKPENFLFASTDENSELKAIDFGLSDFVKLDERLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRTVLKADPSFDEPPWPSLSDEARDFVKRLLNKDPRKRMSAAQALSHPWIKNYEDAKLPLDILVFKLMKTYMRSSSLRRAALRALSKTLTEDELVYLKEQFALLEPNKNGTISLENIQAAFTVNATDAMKESRIADFLASLNALQYRRMGFDEFCAATLSVHQLEALDHWEKRARCAFDMFEKDGNKAIVIDELASELGLGPSIPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKAQ 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00645 598 SUPERFAMILY Protein kinase-like (PK-like) 142 438 IPR011009 -
Tsu05g00645 598 MobiDBLite consensus disorder prediction 1 52 - -
Tsu05g00645 598 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
Tsu05g00645 598 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 45 593 - -
Tsu05g00645 598 SUPERFAMILY EF-hand 435 589 IPR011992 -
Tsu05g00645 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Tsu05g00645 598 PANTHER SERINE/THREONINE-PROTEIN KINASE 45 593 - -
Tsu05g00645 598 SMART serkin_6 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00645 598 ProSiteProfiles Protein kinase domain profile. 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00645 598 Pfam Protein kinase domain 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00645 598 Gene3D Transferase(Phosphotransferase) domain 1 234 419 - -
Tsu05g00645 598 Gene3D Phosphorylase Kinase; domain 1 138 233 - -
Tsu05g00645 598 Gene3D - 425 516 - -
Tsu05g00645 598 CDD STKc_CAMK 144 406 - -
Tsu05g00645 598 ProSitePatterns Protein kinases ATP-binding region signature. 151 177 IPR017441 GO:0005524
Tsu05g00645 598 Gene3D - 432 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00645 Tsu-Chr5 5370349 5374866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00645 1 598 EF-hand Containing Proteins AT3G50530 70.717 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu05g00645 Pkinase 2.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00645 K00924 - gmx:100815721 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03281 04 41931303 41935310 Tsu05g00645 05 5370349 5374866 PCT