Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00629 ATGGCAGCCACCACCACTCCCTCCTCCTCCTCACCACCAAAACCCACCGTTGCCGTTACCGTATCCTCCCTCACAAAAAAACCCCAACCCATCCCATGGACTCACCAAGAAACCATTAACCTCATCAGAGCTTATCAAGAAAAATGGTACTCTCTCAAACGTGGTCCACTTCGCGGCAGTCAATGGGAAGAAGTTGCTGTTGTTGTCGCTGCGAGATGTGGTTACGATTACAATCATCCTTCTAAAACTGCTCTTCAATGTCGTCATAAGATGGAAAAACTCCGTCAACGTCATCGATCTGAAAAGCACCGCCTAACCGCTACTTCCTCTGCTGTTTCTTCCCGATCTTGGCAGTATTTCCGTCTTATGGATGATCTTGAACGTGGTCCTCTTCCTATCTCTGCTCGACCTGTTCTTCATGGTTTCCCTATCTCTGATGAGGATAGTGATGGTGAGAGAAGGAAAAAGCGTAGTGTTAGGTCAAGAAGTATGAATAATATTCTTAACCAGAAACCAGTTCCTACAAGACAACGTCATGAAATTGATGATGACGACGAAGAAGAGGAGgaggatgaagatgatgaagatgaggagGAGGATGAAGGAGTGACGATGGTGAAGGGGTTAACAGCGGAATTAAGAGGTTTTGCTGAGAGGATTGTTGGATTGGAAAATATGAAGATGGAGATGATGAAGGAAACTGAAAGGTTTAGGTTGGAGATGGAGAATAAGAGGATTCGTATGATACTTGAATCTCAATGGAGGATTGTTGATTCCATTGGAAAAGCATTTGGGTCTTCTTAG 804 0.4303 MAATTTPSSSSPPKPTVAVTVSSLTKKPQPIPWTHQETINLIRAYQEKWYSLKRGPLRGSQWEEVAVVVAARCGYDYNHPSKTALQCRHKMEKLRQRHRSEKHRLTATSSAVSSRSWQYFRLMDDLERGPLPISARPVLHGFPISDEDSDGERRKKRSVRSRSMNNILNQKPVPTRQRHEIDDDDEEEEEDEDDEDEEEDEGVTMVKGLTAELRGFAERIVGLENMKMEMMKETERFRLEMENKRIRMILESQWRIVDSIGKAFGSS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00629 267 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 8 198 - -
Tsu05g00629 267 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 147 266 IPR044823 -
Tsu05g00629 267 MobiDBLite consensus disorder prediction 143 157 - -
Tsu05g00629 267 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 147 266 - -
Tsu05g00629 267 Gene3D - 33 100 - -
Tsu05g00629 267 MobiDBLite consensus disorder prediction 182 202 - -
Tsu05g00629 267 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 8 198 IPR044823 -
Tsu05g00629 267 ProSiteProfiles Myb-like domain profile. 32 95 IPR001005 -
Tsu05g00629 267 SMART 118neu2 40 131 IPR006578 -
Tsu05g00629 267 Pfam Myb/SANT-like DNA-binding domain 32 126 IPR044822 -
Tsu05g00629 267 MobiDBLite consensus disorder prediction 134 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00629 Tsu-Chr5 5220125 5221582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00629 33 126 Trihelix Transcription Factor Family AT3G14180 30.851 2.25e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu05g00629 Myb_DNA-bind_4 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00629 - - mtr:MTR_5g017500 357.066