Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00626 atgTCGCAACGGTCGGTGCCGGCGCCGTTTTTGACAAAGACGTATAATATGGTGGATGATTTTGCAACGGATGATGTGATATCATGGAGTGAAAATGGTGAAAGTTTTGTTGTGTGGAAACATGCGGATTTTGCAAGGGATTTGCTACCAAAATATTTTAAGCACAATAATTTCTCTAGCTTTGTTCGCCAGCTCAACACTTATGGATTTCGAAAGGTCGTGCCTGACAAATGGGAATTTGCAAACGAAAATTTCAAGCAAGGCCAAAAACACCTCCTCACCGATATCAAACGCCGCAAAACCGTACCCCAACCGTCGTCACAACCTTCCGAACCCGAAAAAACCAACGCCAACAACTCCTCTCCATCAAACTCCGCCAACGATGGAGCAGGATCCACCTCCAGCTCAACCTCTTCCCCCGATTCAAAGAATCCGGGATCAATCGAAACAACACTTCCCCATAGTGTCAATTTATCGAGCGAAAACgagaaattgaaaaaagatAACGAAACATTGAGTTACGAGTTGGCACTTGCGAAGAAACAATGCGATGAATTGGTGGCTTTCTTAAAAGACGGTTTAAATGTGGGACCGGATCAAATAGATCGCATTATGAAGCAACATGGAAACTATGAATCTATTCAAAATGCGGTTGGTGAAGGTGAAGAAAATGGAAGAGATTGTTTGAAATTGTTTGGTGTTTGGTTGAAAGAAGAAGATTATactaagaaaagaaagaataacatGAGAGGTTGTGAAGACCAATTGGGCTTTGGTGGGCCTAAGGCTAAAGTGATGAACAACAATATTGTTGACTATAGTGCTGTCAATGTTGTGAACATGATGAAAAGTGGCAAGGTTTGTAACTAA 870 0.4034 MSQRSVPAPFLTKTYNMVDDFATDDVISWSENGESFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDKWEFANENFKQGQKHLLTDIKRRKTVPQPSSQPSEPEKTNANNSSPSNSANDGAGSTSSSTSSPDSKNPGSIETTLPHSVNLSSENEKLKKDNETLSYELALAKKQCDELVAFLKDGLNVGPDQIDRIMKQHGNYESIQNAVGEGEENGRDCLKLFGVWLKEEDYTKKRKNNMRGCEDQLGFGGPKAKVMNNNIVDYSAVNVVNMMKSGKVCN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00626 289 MobiDBLite consensus disorder prediction 100 159 - -
Tsu05g00626 289 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 289 - -
Tsu05g00626 289 Gene3D - 2 101 IPR036388 -
Tsu05g00626 289 Coils Coil 162 182 - -
Tsu05g00626 289 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g00626 289 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Tsu05g00626 289 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 289 IPR027725 -
Tsu05g00626 289 MobiDBLite consensus disorder prediction 91 161 - -
Tsu05g00626 289 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g00626 289 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g00626 289 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g00626 289 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g00626 289 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00626 Tsu-Chr5 5207824 5210358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00626 2 289 HSF AT4G36990 49.664 1.94e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu05g00626 HSF_DNA-bind 8.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00626 K09419 - gmx:100791543 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00626 05 5207824 5210358 Tsu05g00626 05 5207824 5210358 ECH
Tsu05g00626 05 5207824 5210358 Tsu04g03252 04 41456410 41460643 PCT