Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00614 ATGGATAATGAAGACATAATGAAAACTTTAGGAAATGTTGAAAGCAACATGGACATGATGACAATGATGATGCAAATGGATAAGTTTCATGATTCATATAATGAACCTTCTTTTTATACCAACAATAACAACACTCTCAATCTCAATCTTACCAACAATGAAAACGATTTCCCTTATGTAACTTCATCATTCACACCCTCTTTAATCAATCCTCCACCCTATCCAATGACACCGTCGACTCTTCAAACGTCGAACAGAGTTCAAATCCCGTCAGAGACAGTTAACAACGCTTCGTTTTCCTATCCTGAGAAAAAAACATCAATGTCAGCAATGAGAGAGATGATATTCCGTATGGCGGTTATGCAACCGATTCATATCGACCCAGAAACGATAAAACCACCGAAGAGAAAGAATGTGAAGATTTCAAAGGATCCACAGAGTGTAGCAGCAAGAcatagaagagaaagaattagTGAAAGAATAAGGATATTACAAAGATTAGTTCCTGGTGGAACTAAAATGGATACAGCTTCAATGTTAGATGAAGCTATACATTATGTGAAGTTTTTGAAGAAACAAGTTCAAACGTTGGAACAAGCTGGGGCAAATAAACCTTTGAATTTTGTTGGGTTTCAAGGAGTGGTTTCTAATGctaattttaattattcttCTAATTTGCTTAGAGGTTGTTCATCACCTTGTCAAATTGTGGGTCCTAATTCCAAAAAAATGCTTAGTTGA 741 0.3468 MDNEDIMKTLGNVESNMDMMTMMMQMDKFHDSYNEPSFYTNNNNTLNLNLTNNENDFPYVTSSFTPSLINPPPYPMTPSTLQTSNRVQIPSETVNNASFSYPEKKTSMSAMREMIFRMAVMQPIHIDPETIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANKPLNFVGFQGVVSNANFNYSSNLLRGCSSPCQIVGPNSKKMLS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00614 246 SMART finulus 147 196 IPR011598 GO:0046983
Tsu05g00614 246 PANTHER TRANSCRIPTION FACTOR HEC2 6 237 - -
Tsu05g00614 246 Coils Coil 180 200 - -
Tsu05g00614 246 MobiDBLite consensus disorder prediction 129 152 - -
Tsu05g00614 246 CDD bHLH_AtIND_like 142 198 - -
Tsu05g00614 246 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 6 237 IPR045843 GO:0003700|GO:0006355
Tsu05g00614 246 Pfam Helix-loop-helix DNA-binding domain 151 190 IPR011598 GO:0046983
Tsu05g00614 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 199 IPR036638 GO:0046983
Tsu05g00614 246 Gene3D - 140 207 IPR036638 GO:0046983
Tsu05g00614 246 MobiDBLite consensus disorder prediction 128 152 - -
Tsu05g00614 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00614 Tsu-Chr5 5048339 5049088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00614 1 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 52.232 1.23e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g00614 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00614 - - gmx:100796649 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00614 05 5048339 5049088 Tsu05g00614 05 5048339 5049088 ECH