Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00611 ATGAATTGGGTTCGTGGTCACTTGTTAGGCAGTGGAAGCTTTGCTACCGTCAACTTAGCTACACACACAAACAATTCCGATAACTTTCCGTCTATCACCGCTGTCAAATCCTCCGATACTTGCTATTCTCATCTTCTCCAAAATGAGAAACAAATACTCGATCGTTTGGGATCTTCTCCGTATATTATCAATTGTTTTGGCGACGATCACACTTTCGAAGACGGCGAAGactattataatatttttctagAATACGCCGTTGGTGGTACTCTCTTTGATCAACTCAAAAATTATGGTGGTAAGTTACCGGAAACCCTCGTTCGTCGTTACACGAGGTCTATCCTTGAAGGACTTAAGTATGTTCATGAAAAGGGTTTTGTTCACTGTGACGTGAAGTTACAAAACATTCTTGTAATGGAGGATGACAATGTTAAGATTTCGGATTTTGGTCTTGCAAAggagaaaagtttaaagaacGATGGAAAATTGGAATGCAGAGGAACTCCGATGTTTATATCACCAGAAGCAATCAATGATAATGTTTATGAATCACCGGCAGATATATGGGCTCTTGGTTGTGCGTTAGTGGAGATGTTTACCGGAAAACCTGCATGGAATTTTAGTGGGTCGAATATATGGTCCTTGTTGATTAGAATTGGGGTAGGAGAAGAATTACCATTGATTCCGGATGAATTTTCACAAGAAggaaaagattttcttcaaaaaatattcgTGAAGGATCCGTTGAAAAGATGGACAGCGGATATGCTTTTGAAACATCCTTTTGTATgggatgataaaaatatttcattggTGAAAGAGTTAATTAATGAGTCGTCATCACCATCTCCAAGAACACACTTCAATTTTTCTAAAGAATTTGAGTATGATTTTTGTTCGCCGGAAGAGAGGCTTCAACCACTAGTCGAAGATCAAAGATTTGTTAGATTGGTTAGAATCTGA 963 0.3583 MNWVRGHLLGSGSFATVNLATHTNNSDNFPSITAVKSSDTCYSHLLQNEKQILDRLGSSPYIINCFGDDHTFEDGEDYYNIFLEYAVGGTLFDQLKNYGGKLPETLVRRYTRSILEGLKYVHEKGFVHCDVKLQNILVMEDDNVKISDFGLAKEKSLKNDGKLECRGTPMFISPEAINDNVYESPADIWALGCALVEMFTGKPAWNFSGSNIWSLLIRIGVGEELPLIPDEFSQEGKDFLQKIFVKDPLKRWTADMLLKHPFVWDDKNISLVKELINESSSPSPRTHFNFSKEFEYDFCSPEERLQPLVEDQRFVRLVRI 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00611 320 CDD STKc_MAPKKK 2 263 - -
Tsu05g00611 320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Tsu05g00611 320 SMART serkin_6 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00611 320 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 295 - -
Tsu05g00611 320 SUPERFAMILY Protein kinase-like (PK-like) 3 292 IPR011009 -
Tsu05g00611 320 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Tsu05g00611 320 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 295 - -
Tsu05g00611 320 Gene3D Transferase(Phosphotransferase) domain 1 2 316 - -
Tsu05g00611 320 ProSiteProfiles Protein kinase domain profile. 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00611 320 Pfam Protein kinase domain 5 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00611 Tsu-Chr5 5029120 5030082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00611 1 309 MAP Kinase Kinase Kinase AT3G50310 51.672 2.46e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Tsu05g00611 Pkinase 6e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00611 - - gmx:100782937 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00611 05 5029120 5030082 Tsu05g00611 05 5029120 5030082 ECH