Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00605 ATGGCGGATGAAGATGGCTCATCAAGCAGGAAGCGAAGACCAACCAGAGGACCCGATGCAACCGCCCGCAGCCAAGCATTAGAGCGTCTTAAAGCACGCCGATCTGGCGATCGTGGATCCGACACCGCCGGACCACAAATCAGGTTAGAAAACCCTATCTACGATACAATACCGGAAGAAGAATATAACGCTCTAGTTGCTAGTCGCCGCGATCAAGCGCGGTCATTCATCGTCGACGATGAAGGTATTGGTTACGGCGATGAAGGCGAAGAAGAGGATTGGTCCAAAGCCGGTGTCTCCTTCTCCGATGATGAATCTGAAGGCGAATCGGAGAAGCCTAAACGGAAGAAAGAAAATTCTCAAACTAAACGGACTTCTTCTTCTGCTGCTAAACTCTCAGCCGCTGCTGCTATGATGGGAGGGCAGAGAGTGTCTTCCATGTTCACTTCCGCTGTTTTCAAGAAAAGTAGAGACGATAAAGCTTGCGAGAGCCTCGTCGACGAGGTTCTCAAGGAATTTGCTCCTGATGAGACTGATAAACTCAGCCGCAGAAAAGTGCAATCAAATTCGTCTTCAATTTCCAATGATGCTTTGCGGATTAAGCactctgatgaatctgtaaCCGTAAGAGGTTCTTCTTTGCACCAAAATTTTGTAATTGCAAATTTCGATACTGAATCTGTTAAGGTTAATAAGGATAAGGACAATGGATCTaggttagggttagggttagagCAAAAATGTGAAGTAGAAGTGAATGGAAGTTTGGAAAATGACGAGGGGCGAATGGTGGTGGAATCTAATGATTGGTCTTCTCTGAGTAATGGGGATTTAGTTGAAGAGAAAGTGGCTAAGGCGAAAGAGGATGAAATGGAAGCAAAACCTGTTATTAAAAAGGAAGGGTTCACTTTGAATGCGAAAGTTAATCAAGAGGTGGTGGATCCCAAGTCTTATGCTACTGCTGGTTGGAAGGCGGCGAGGAGTGGTACTGGTGGAGGTGGGGAAACAAATATTGATGATTCGaattcaaataatcatcaaaaCTCTGAGTTCAATTTGGAGCCAGAGGGATCCCTTCCTTTCTACATACTTGATGCTTATGAGGAGTATTATGGAGCCAATATGGGtactatttatttgtttgggAAGGTCAAAACAGGGAATTTGTATCAGAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGACGTGTCTATGCAATTCCAAGTCATCCTTTGCATTCCATCGACGAGATGATAAAGCTTGAGAAAGATGTCCAAGAGTCTCGAGTCTCTCCTGCAGATTTCCGTAAAAAGCTGCAAGATGCAGTATCTGATACAAAGAATGAGATAGCAAAACATCTGGTGGATCTGGGTGTTTCTACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAGCGATCTGACATTCCTGCAGGTGAAAATTATGTGGTGAAAATAAATTATCCGTTCAAGGATACAGCGCTTCCAGTAGACCTCAAAGGAGAAAGTTTCTGTGCTCTTCTTGGAGCTCGAAGCAGTGCACTTGAGCTATTTctgattaaaagaaaaattaagggGCCTTCATGGCTACAAGTTTCAAACTTTTCTACTTGCACAGCTTCCCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCTAAAGACATCAGGGTTTCTTCTTTATCTTCCTCAAAAATCACTCTCGTGACTCCTCCTGTGGTTGTCACGGCAATAAACTTGAAAACcaccataaatgaaaaacaGAACATAAATGAAATTGTATCTGCATCTGTTGTCAGTTGCAATATGGTTAAGattgaCACTCCTATGCTGGCTTCAGAGTGGAAGAGACCTGGAATGCTGACCCATTTTACTGTTATTCGCAAACTTGATGGGAATATATTTCCAATGGGATTCAATACAGAGGTCACAGACAGAAACGTAAAAGCTGGGTCAAATGTTCTTTGTGTTGAAAGCAGTGAAAGAGCATTGTTAAATCGTCTAATGTTACAATTACACAAGATGGATAGCGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCTCAGGCTTGCAGAGTACCAAGCAGCATGTGGTCTAAACTGGGCCGTCTCAACCGTTCTACGATGCCTAAGCTCGATAGAAGAGGCAAAACATTTGGTTTTGGAGCTGATCCTGCTATCATGTCGTGTATTGCCGGTCGGCTTCTTTGTGATACATATTTGTGTTCCCGCGACCTATTAAAGGAGGTTAGTTATTCTTTAACCCACCTTGCAAAAACACAGCTGAACCAGTCTCGGAAGGAAGTTTCCCCACATGACGTTCCAAAAATGTTTCAAACTGCAAAATCTCTGATGGAGCTAATTGAATATGGTGAAACGGATGCATGGTTGTCCATGGAACTCATGTTTTATTTGAGTGTCCTTCCTCTCACACGCCAGTTGACTAATATAAGTGGCAATCTGTGGGGAAAAACTCTTCAGGGTGCCCGGGCACAGAGGGTGGAGTATCTTTTGTTGCACGAGTtccataaaaagaaatatattgttCCAGACAAGTTTTCTAATAAcgcaaaagaaacaaagttgACAAAACGCAGAGTAACTCATGGCGTCGACGGTGGTAACTTTGATGATGCAGATATTAACGATGATGCTTCTGAAAGTGATCATAAGAAAAGCAAAAAAGCTGCTTCCTATGCTGGAGGGCTGGTTTTAGAGCCAAAGAAGGGTCTATACGACAAATATATATTACTTCTGGACTTCAATAGTCTATACCCTTCTATCATTCAGGAATATAATATCTGCTTCACAACTGTTGAAAGATCTACAGATGGATCTTTTCCTCGTCTGCCATCCAGTAAAACAACTGGAGTCTTGCCAGAGTTGCTCAAAAAGCTTGTTAAGTGGAGGCGAGATGTAAAGACATGGATGAAGACTGCATCTGGTCTTAAACGCCAGCAACTGGACATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGTATGTATGGTTGCCTGGGATTTTCCAATTCGAGATTTTACGCAAAGCCACTGGCTGAGCTCATAACCTTACAAGGAAGGGAGATTCTACAAAGTACTGTTGATCTTGTTCAAAATAACTTGAATCTAGAGGTGATCTATGGTGATACTGATTCGATAATGGTTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATATCTAAGAAAGTTATTCAAGAGGTCAATAAGAAATATAGGTGCCTAGAAATCGATCTTGATGGTTTGTATAAGAGGATGCTACTtctcaagaaaaagaaatatgcagCTGTTAAGGTGCAGTTTAAAGATGGCACCCCATATGAGGTTATTGAACGCAAAGGTCTGGATATTGTACGCCGTGACTGGAGCTTATTAGCGAAAGATTTAGGAGATTTTTGCTTGACTCAAATTTTGTCGGGAGGGTCATGCGAAGATGTCGTCGAATCAATTCACAACTCTCTCATGAAGGTACAAGAAGAAATGAGAAACGGACAAGTAGCACTAGAAAAATATGTTATCACAAAGACATTGACTAAACCACCCGAAGCATATCCTGATGCCAAAAATCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACACCTCTGGTTGCTCTGTCGGTGATACAATCCCTTATATAATTTGCTGTGAACAGGGTGGTAGTTCAGGCAGTGCAACAGGAATTGCTCAACGTGCTAGACATCCTGATGAACTAAAACAAGAACAGGGGACATGGCTAATTGATATTGATTACTATTTGTCTCAACAGATTCATCCTGTCGTGTCACGTCTTTGTGCATCTATTCAGGGTACAAGCCCTGAAAGACTTGCTGATTGTTTAGGGCTTGACACATCAAAGTTTCAACATAAATCAAGTGAAGCTTTACGTGACGATCCTACAAGCTCACTCTTGTTTGCTGGTGATGATGAGGAGAGGTATCGGGGATGTGAGTCGCTAGTCTTGTCATGCCCCAGCTGCTCTGGTACATTTGACTGCCCACCTGTGTTCAAATCTATTTGTATGTTGGGAAATGAAAAGCCAACCAGCTTAGGCGTGGAGGAATCGGACTACAATTTCTGGCGCAAGCTGTGCTGTCCCAAATGCTCTGAAGATGGTGTTGGTAGAATTTCTCCTGCAATGATAGCCAATCAGGTCAAACGGCAAGCGGAGGAGTttgttttaatgtattataGAGGTTTACTATTGTGTGATGATGAAACATGCAAGCATACAACGCGAAGTGTCAGCTTTCGTTTGGTTGGTGATTCTGAGCGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAACGGGCATCTTTATAGAAAGTACACTGAAGCCGACTTGTACAAGCAGCtctcatatttttgtcatgtgTTTGATACTGTTTGTTGTATAGAAAAGATGGAGGCAAAGTCTAGGATACCAATTGAGAAGGAGTTAATCAAAATTAGGCCAATAGTTGATCTTGCTGCATCAACAATACAAAAGATCAGGGATCGTTGTGCCTTTGGGTGGGTGAAGCTGCAGGATCTGGTTGTTACAATTTAA 4626 0.4083 MADEDGSSSRKRRPTRGPDATARSQALERLKARRSGDRGSDTAGPQIRLENPIYDTIPEEEYNALVASRRDQARSFIVDDEGIGYGDEGEEEDWSKAGVSFSDDESEGESEKPKRKKENSQTKRTSSSAAKLSAAAAMMGGQRVSSMFTSAVFKKSRDDKACESLVDEVLKEFAPDETDKLSRRKVQSNSSSISNDALRIKHSDESVTVRGSSLHQNFVIANFDTESVKVNKDKDNGSRLGLGLEQKCEVEVNGSLENDEGRMVVESNDWSSLSNGDLVEEKVAKAKEDEMEAKPVIKKEGFTLNAKVNQEVVDPKSYATAGWKAARSGTGGGGETNIDDSNSNNHQNSEFNLEPEGSLPFYILDAYEEYYGANMGTIYLFGKVKTGNLYQSCCVVVKNMQRRVYAIPSHPLHSIDEMIKLEKDVQESRVSPADFRKKLQDAVSDTKNEIAKHLVDLGVSTFSMAPVKRKYAFERSDIPAGENYVVKINYPFKDTALPVDLKGESFCALLGARSSALELFLIKRKIKGPSWLQVSNFSTCTASQRVSWCKFEVTVDSPKDIRVSSLSSSKITLVTPPVVVTAINLKTTINEKQNINEIVSASVVSCNMVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPMGFNTEVTDRNVKAGSNVLCVESSERALLNRLMLQLHKMDSDVLVGHNISGFDLDVLLHRSQACRVPSSMWSKLGRLNRSTMPKLDRRGKTFGFGADPAIMSCIAGRLLCDTYLCSRDLLKEVSYSLTHLAKTQLNQSRKEVSPHDVPKMFQTAKSLMELIEYGETDAWLSMELMFYLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHEFHKKKYIVPDKFSNNAKETKLTKRRVTHGVDGGNFDDADINDDASESDHKKSKKAASYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSTDGSFPRLPSSKTTGVLPELLKKLVKWRRDVKTWMKTASGLKRQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMVYSGLDDIAKATSISKKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLAKDLGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYTSGCSVGDTIPYIICCEQGGSSGSATGIAQRARHPDELKQEQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDTSKFQHKSSEALRDDPTSSLLFAGDDEERYRGCESLVLSCPSCSGTFDCPPVFKSICMLGNEKPTSLGVEESDYNFWRKLCCPKCSEDGVGRISPAMIANQVKRQAEEFVLMYYRGLLLCDDETCKHTTRSVSFRLVGDSERGTVCPNYPRCNGHLYRKYTEADLYKQLSYFCHVFDTVCCIEKMEAKSRIPIEKELIKIRPIVDLAASTIQKIRDRCAFGWVKLQDLVVTI 1541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00605 1541 MobiDBLite consensus disorder prediction 1 57 - -
Tsu05g00605 1541 TIGRFAM pol2: DNA polymerase (pol2) 53 1291 - -
Tsu05g00605 1541 Gene3D Helix hairpin bin 969 1020 - -
Tsu05g00605 1541 Gene3D - 1137 1323 IPR042087 -
Tsu05g00605 1541 SMART polmehr3 576 1073 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tsu05g00605 1541 CDD DNA_polB_alpha_exo 576 827 - -
Tsu05g00605 1541 MobiDBLite consensus disorder prediction 1 18 - -
Tsu05g00605 1541 Gene3D - 361 560 - -
Tsu05g00605 1541 PANTHER DNA POLYMERASE 346 1538 - -
Tsu05g00605 1541 Pfam DNA Polymerase alpha zinc finger 1334 1537 IPR015088 GO:0003887|GO:0006260
Tsu05g00605 1541 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 346 1538 - -
Tsu05g00605 1541 SUPERFAMILY Ribonuclease H-like 356 864 IPR012337 -
Tsu05g00605 1541 Coils Coil 1087 1107 - -
Tsu05g00605 1541 Gene3D - 576 887 IPR036397 GO:0003676
Tsu05g00605 1541 MobiDBLite consensus disorder prediction 324 347 - -
Tsu05g00605 1541 CDD POLBc_alpha 905 1309 IPR045846 GO:0003887|GO:1902975
Tsu05g00605 1541 PRINTS DNA-directed DNA-polymerase family B signature 1059 1067 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tsu05g00605 1541 PRINTS DNA-directed DNA-polymerase family B signature 930 943 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tsu05g00605 1541 PRINTS DNA-directed DNA-polymerase family B signature 1006 1018 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tsu05g00605 1541 Gene3D DNA Polymerase alpha, zinc finger 1333 1526 IPR038256 -
Tsu05g00605 1541 Pfam DNA polymerase family B 835 1293 IPR006134 GO:0000166|GO:0003677
Tsu05g00605 1541 Gene3D Palm domain of DNA polymerase 899 1124 IPR023211 -
Tsu05g00605 1541 MobiDBLite consensus disorder prediction 80 134 - -
Tsu05g00605 1541 SUPERFAMILY DNA/RNA polymerases 860 1308 IPR043502 -
Tsu05g00605 1541 Pfam DNA polymerase alpha subunit p180 N terminal 27 94 IPR024647 -
Tsu05g00605 1541 MobiDBLite consensus disorder prediction 89 122 - -
Tsu05g00605 1541 ProSitePatterns DNA polymerase family B signature. 1061 1069 IPR017964 GO:0000166|GO:0003676
Tsu05g00605 1541 Pfam DNA polymerase family B, exonuclease domain 391 769 IPR006133 -
Tsu05g00605 1541 Gene3D - 401 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00605 Tsu-Chr5 4993514 5006866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00605 5 1539 Core DNA Replication Machinery Family AT5G67100 60.528 0.0 1839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00605 K02320 - gmx:100798779 2234.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00605 05 4993514 5006866 Tsu05g00605 05 4993514 5006866 ECH