Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00603 ATgggagataataataataataattcctcACAAGATGAAATCTCTCTTTTTCTCCATCAAATTCTCCTCcgttcatcttcttcttcttcttccatgcCTGGTGGATCCATCAACTCAAACCCACTTCAAGATGGACCCTTTCATTCCACTTTCAGACCAAACCATCCTTTAAATGTCTCTTCATCTTCTGTTGCtggtggaggaggaggaggactCAGTGGTAATGACACTGATGAATATGACTGTGAAAGTGAGGAGGGTGTTGAAGTATTGACTGAAGAAATTCCAAGAAAGTCTGGTTCTTCTAGGAGTTCTTCAAAAAGAAGTAGAGCAGCTGAAGTTCATAACTTGTCTGAAAagAGAAGAAGGAGTAGGATCAATGAGAAAATGAAGGCTTTACAAAATCTAATTCCTAATTCTAACAAGACTGATAAGGCTTCAATGCTAGATGAAGCTATTGAATACCTTAAACAACTTCAGCTCCAAGTACAGATGCTGTCATTGCGAAATGGATTGAGTTTGCATCCTATGTGCTTTTCCGAAGGCTTGCATTCTCTTCCATTTTCTCAGATGAGTACGGAGTTGAGTGAAGGAAACAGGTCTGCCCCTTTAAACATGGCATCTACTCTGCCTCATCACCAAGACAATCCCTTGCTCTATGCATCCAATCTACCTAACAAAAACACATTACCGAGTCAGCCATCAATGTCCTCCTATCCTTCATATATTAACAACGCAGAAACTTCTTTCGGTCTGGAATCCCGTATTCCAGCACAGAAAAAACGTCTTCAACGATCATCAGAGGCAATAGATGGTGAAGACATGTTGCAGCACCAGCAATCGAATCCAATCTACTCTTCTACCAATCTATTAGGTGGTTCTCAAGTTGCCAAAGAATTCGAGTCAGGCTCAGCAGCTACACCTATTACTACTAGCAATTCTCTGCAAACGTGTATCACCGGAAGAGATCAGTCAGGAGCTATCATGAGAAATCCGGAACCCAACATTATATTTTCATCGCAGTTAAGTAGGTAA 1035 0.3768 MGDNNNNNSSQDEISLFLHQILLRSSSSSSSMPGGSINSNPLQDGPFHSTFRPNHPLNVSSSSVAGGGGGGLSGNDTDEYDCESEEGVEVLTEEIPRKSGSSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNGLSLHPMCFSEGLHSLPFSQMSTELSEGNRSAPLNMASTLPHHQDNPLLYASNLPNKNTLPSQPSMSSYPSYINNAETSFGLESRIPAQKKRLQRSSEAIDGEDMLQHQQSNPIYSSTNLLGGSQVAKEFESGSAATPITTSNSLQTCITGRDQSGAIMRNPEPNIIFSSQLSR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00603 344 MobiDBLite consensus disorder prediction 26 68 - -
Tsu05g00603 344 Pfam Helix-loop-helix DNA-binding domain 114 160 IPR011598 GO:0046983
Tsu05g00603 344 MobiDBLite consensus disorder prediction 26 122 - -
Tsu05g00603 344 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 6 284 IPR031066 -
Tsu05g00603 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 169 IPR036638 GO:0046983
Tsu05g00603 344 CDD bHLH_AtPIF_like 111 172 - -
Tsu05g00603 344 Gene3D - 105 168 IPR036638 GO:0046983
Tsu05g00603 344 SMART finulus 116 165 IPR011598 GO:0046983
Tsu05g00603 344 MobiDBLite consensus disorder prediction 108 122 - -
Tsu05g00603 344 Coils Coil 149 169 - -
Tsu05g00603 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
Tsu05g00603 344 PANTHER TRANSCRIPTION FACTOR SPATULA 6 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00603 Tsu-Chr5 4981279 4984719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00603 75 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 53.514 1.38e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g00603 HLH 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00603 - - gmx:100793754 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00603 05 4981279 4984719 Tsu05g00603 05 4981279 4984719 ECH