Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00595 atgaagaaaaaaactaataagaTATTTGGATTTTcagttgatgatgatgatgatgatagtgagTGTCCACCTGTGACTAGACAGTTTTTTCCGGTGGAAGATACTGAGATGACTGCGGTGGTTGATTCTACTTCCGGTGGTGGTAGTGGTGGTGTTGGTGGTGGaggttcttcttcttttccACGTGCTCACTGGGTAGGTGTTAGATTTTGTCAATCGGAAACTGTTAACGGCGGTAAATCAATTGAAAATTCTGCTTCTCAACCGACGAAGAAGAGTCGTCGAGGACCGAGGTCTAGAAGTTCTCAGTATAGAGGTGTTACTTTTTACCGAAGAACTGGTCGATGGGAATCTCATATTTGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCACGTGCATATGATAGAGCAGCAATTAAGTTCAGAGGAGTAGAGGCagacataaacttcaacatAGAAGATTATGAAGAGGATTTGAAGCAGATGAGCAATTTAACTAAGGAAGAATTTGTGCACGTACTTCGGCGACAAAGTACTGGATTTCCAAGAGGAAGTTCTAAATATAGAGGTGTAACTTTGCACAAATGTGGAAGATGGGAGGCGCGAATGGGTCAATTCTTAGGGAAAAAGTACGTTTATCTGGGTCTATTTGACACCGAGATTGAAGCTGCAAGGGCATATGATAAAGCAGCAATTAAATGCAACGGCAAAGAGGCTGTGACCAATTTTGATCCTAGCATCTATGATAATGAGCTTAATTCTGAATCCTCAGGTAATGCTACGGCGAATCACAATCTGGATTTGAGTTTGGGCAGTTCAAGTTCTAAAAGTAGCAATAATCAAGCATTTGGGAATCACAACACAAATGCAGCCACGGATCAATATATGGCGCCTGAAGCAAATTGGCGGAATGGTGGAATCAAGCCTAAGCCGGTGAATATCTTACCAAAACCATGTGGTATGAGTAACATGGAAGCTTATGTAAGGGATGGATATGGAGAGAATGAAGCCTTGAGAATGCTAAGCCAAACTCATCTTCAATCTCCAGTCACTAATGAAATGCATAGATATGGTCCCTACAGATCACCTGTTGAACAACACCACCCTCAAATGCTTCACAGTTTTCAACATCTTCACCCCTCAAATTTTCATGTTTCGAGTAGCAGCAGCAATGGAGGCCGAATTGGAAGTGATTTAACGTTATCAATGTCCGATCAACAAAAGTGGCAAACGGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAAATAAGACCCTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCTTAA 1380 0.4036 MKKKTNKIFGFSVDDDDDDSECPPVTRQFFPVEDTEMTAVVDSTSGGGSGGVGGGGSSSFPRAHWVGVRFCQSETVNGGKSIENSASQPTKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESSGNATANHNLDLSLGSSSSKSSNNQAFGNHNTNAATDQYMAPEANWRNGGIKPKPVNILPKPCGMSNMEAYVRDGYGENEALRMLSQTHLQSPVTNEMHRYGPYRSPVEQHHPQMLHSFQHLHPSNFHVSSSSSNGGRIGSDLTLSMSDQQKWQTGPPHLLATAAASSGFPPQIRPSSSQGWLQKNGFHTLMRPS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00595 459 MobiDBLite consensus disorder prediction 434 450 - -
Tsu05g00595 459 MobiDBLite consensus disorder prediction 262 296 - -
Tsu05g00595 459 MobiDBLite consensus disorder prediction 426 459 - -
Tsu05g00595 459 SMART rav1_2 103 165 IPR001471 GO:0003700|GO:0006355
Tsu05g00595 459 SMART rav1_2 195 258 IPR001471 GO:0003700|GO:0006355
Tsu05g00595 459 ProSiteProfiles AP2/ERF domain profile. 103 159 IPR001471 GO:0003700|GO:0006355
Tsu05g00595 459 CDD AP2 103 160 IPR001471 GO:0003700|GO:0006355
Tsu05g00595 459 MobiDBLite consensus disorder prediction 77 92 - -
Tsu05g00595 459 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 457 - -
Tsu05g00595 459 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 457 - -
Tsu05g00595 459 MobiDBLite consensus disorder prediction 77 104 - -
Tsu05g00595 459 Gene3D AP2/ERF domain 194 253 IPR036955 GO:0003700|GO:0006355
Tsu05g00595 459 Gene3D AP2/ERF domain 102 161 IPR036955 GO:0003700|GO:0006355
Tsu05g00595 459 SUPERFAMILY DNA-binding domain 102 160 IPR016177 GO:0003677
Tsu05g00595 459 Pfam AP2 domain 103 151 IPR001471 GO:0003700|GO:0006355
Tsu05g00595 459 Pfam AP2 domain 194 243 IPR001471 GO:0003700|GO:0006355
Tsu05g00595 459 MobiDBLite consensus disorder prediction 1 22 - -
Tsu05g00595 459 CDD AP2 194 254 IPR001471 GO:0003700|GO:0006355
Tsu05g00595 459 SUPERFAMILY DNA-binding domain 194 254 IPR016177 GO:0003677
Tsu05g00595 459 ProSiteProfiles AP2/ERF domain profile. 195 252 IPR001471 GO:0003700|GO:0006355
Tsu05g00595 459 PRINTS Ethylene responsive element binding protein signature 196 207 IPR001471 GO:0003700|GO:0006355
Tsu05g00595 459 PRINTS Ethylene responsive element binding protein signature 234 254 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00595 Tsu-Chr5 4917524 4921080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00595 13 289 AP2-EREBP Transcription Factor Family AT4G36920 72.789 5.28e-129 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu05g00595 AP2 3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00595 K09284 - gmx:100786333 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00595 05 4917524 4921080 Tsu05g00595 05 4917524 4921080 ECH
Tsu05g00595 05 4917524 4921080 Tsu04g02107 04 23283222 23287202 PCT