Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00593 ATGGAAGGTGAAAGAGGaggaaaaggagagagaaagagaaacggTGGTGTTGTTGTTGAAGGCGGCGCAACAGAGAGAAGATACAAAGGAATTCGTATGAGAAAGTGGGGTAAATGGGTAGCTGAAATTCGTGAACCAAATAAACGTTCTCGTATTTGGTTAGGTTCTTATTCTACACCTATCGCCGCCGCTAGAGCTTACGACACCGCCGTTTTCTATCTCCGTGGACCTTCTGCACGTCTCAATTTCCCTGAACTACTCGCCGgtgaaaacaacaacaacaacaacaataacgcTGTTGTTTCTTCTGATTTATCCGCTGCTTCCATTCGTAAAAAAGCTACTGAAGTTGGTGCTAGGGTTGATGCTCTTCAAGCTActcttcatcatcaccatcataatcatcatcataataataacCACCGTGTTACTCCGCCGCCGCCGGAGTTACTTGACGGTGGTGGTGGTTCTGGTGATTTTGCGGAGCGGGTTGATTTGAATAAGATTCCTGAACCGGAGAGTTCAGATTGTGAATGGGAAGTTAATTGA 549 0.3843 MEGERGGKGERKRNGGVVVEGGATERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFPELLAGENNNNNNNNAVVSSDLSAASIRKKATEVGARVDALQATLHHHHHNHHHNNNHRVTPPPPELLDGGGGSGDFAERVDLNKIPEPESSDCEWEVN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00593 182 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Tsu05g00593 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 16 176 - -
Tsu05g00593 182 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Tsu05g00593 182 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Tsu05g00593 182 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Tsu05g00593 182 MobiDBLite consensus disorder prediction 130 182 - -
Tsu05g00593 182 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Tsu05g00593 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 16 176 - -
Tsu05g00593 182 CDD AP2 27 86 IPR001471 GO:0003700|GO:0006355
Tsu05g00593 182 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Tsu05g00593 182 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00593 Tsu-Chr5 4894342 4894890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00593 25 180 AP2-EREBP Transcription Factor Family AT5G67190 58.721 5.20e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g00593 AP2 4.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00593 K09286 - gmx:100783682 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00593 05 4894342 4894890 Tsu05g00593 05 4894342 4894890 ECH