Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00589 ATGGAATACATAAACAACAAATTCCAAGAGAATGCAGTTGAAGAAGCTGCTTCTGGTTTACAAAACATAGACAAACTCATTAAATTGCTATCTTCAAATACAAAGTCTAACTCCATggaattcattgaaaaaattgatcaaaTGGATTACAAAACAGTTGTTGATGTAGCTGTTTCAAAGTTTAAGAATGTTATTTCACTTTTGAGTCAAAACAGAACAAGAACTGGTCATGCTCGTTTCAGAAGAGCACATTTACCTTCTTCTACAACATTTTCTGAAACTAGAGTCTACCATGCTACTCCGTTGCAGCATATTCCTCCTATGGTTCCCAAAAGTGGAGGACTGATTCAGAATAAGAATATCATTGATTTCTCTGCTAATTCATTCATGGGCTATTACAAGTGTAGCAGTGTAAAAGGGTGTCCAGCTCAAAAACATGTAGAAAGGGCATTGGATGATTCATCTATGTTGGTAGTTACTTATGAAGGAGAGCACAATCACTCCCTCTCTATGACTGAAGCTAATAATCTAATCTTAGAATCCTCTTGA 549 0.3443 MEYINNKFQENAVEEAASGLQNIDKLIKLLSSNTKSNSMEFIEKIDQMDYKTVVDVAVSKFKNVISLLSQNRTRTGHARFRRAHLPSSTTFSETRVYHATPLQHIPPMVPKSGGLIQNKNIIDFSANSFMGYYKCSSVKGCPAQKHVERALDDSSMLVVTYEGEHNHSLSMTEANNLILESS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00589 182 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 131 182 - -
Tsu05g00589 182 ProSiteProfiles WRKY domain profile. 131 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g00589 182 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 8 107 - -
Tsu05g00589 182 Gene3D WRKY domain 115 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g00589 182 Pfam WRKY DNA -binding domain 129 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g00589 182 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 131 182 IPR044810 GO:0003700
Tsu05g00589 182 SUPERFAMILY WRKY DNA-binding domain 130 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g00589 182 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 107 IPR044810 GO:0003700
Tsu05g00589 182 SMART WRKY_cls 119 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00589 Tsu-Chr5 4855568 4856483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00589 10 83 WRKY Transcription Factor Family AT2G24570 41.333 5.08e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu05g00589 WRKY 1.6e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00589 - - mtr:MTR_5g016610 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00589 05 4855568 4856483 Tsu05g00589 05 4855568 4856483 ECH
Tsu05g00589 05 4855568 4856483 Tsu04g04554 04 53171991 53173503 PCT
Tsu04g02115 04 23381552 23384880 Tsu05g00589 05 4855568 4856483 PCT