Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00584 ATGGAACCAGCATCTGCTGTAACTCCTCCAGCTTCTGACACTGAACATTCCTCAACCAAAGTATCTGCTGAAAATAGCAATGCACGTGATTCACCATCCTTGTCACCAACTTCTGGTGTATCTTCACGGGCGAGAAATCTGGGGCTTGGGGCAGCAGATCAGAACTCACAGACTGAGAACAGTGGTATGTCTGCATTTGCTGTAACTCAAGCATTGATTGAACCGGCATCTGCTGTAACTCCTCCAGCTTCTAACACTGAACATTCCTCCACCAAAGTATCTGCTGAAAATAGCAATGCACGAGATTCATCGTCCTTGTCACCAACTTCTGGTATATCTTCCTGGGCAAGAAATCTGAGGCTCGGGGCAGCAGATCAGAACTCACAGACTGGGAACAGTGGTATTTCTGCATTTGTTCGCCTGGCTAGTGGGATTGGACTACGAAGTCCTTCAAATGAGACTGCTCCAGGCAACTCAGGAGCTGAGCAAACTAATTTAATTGAATCATTCACCAAAGGGTTGGTGGACTCTTCCAAGAGTGCAGTAAAGGCGATGCAGACCAAAGCACGGCATATTGTCTCTCAAAATAAACGCAGATACCAGGAAGATGGATTTGATTTGGATATGACATACATAACTGAAAATATAATATCTATGGGATTTCCTGGTGGTGATTTAAGCTCTGGAATTGTTGGGTACATTGAGGGGTTCTATCGCAATCACATGGAAGAAGTAATCAAGTTCTTTGAAACTCATCATAAGGGAAAGTATAAAGTATACAATCTTTGTTCAGAGAGGTTGTATGATGGATCACTTTTCCAGGGGAAGGTTGCAAGTTTCCCATTTAGTGATCATAATTGCCCTCCTATTCAACTTATAGCATCATTTTGTCAAAGTGCACATTCATGGTTGAAGGAGGATATCCAAAATGTGGTAGTTGTTCATTGTAAAGCTGGTCTGGGAAGGACAGGACTGATGATTTGTAGTCTTCTTTTGTTTCTTAAGTTCTTCACCACTCCTGAGGAAGCCATTGATTACTTTAACCAGAAAAGATGTGTAGATGGAAAGGCTCTAGTTCTCCCTAGTCAGATTAGATATGTCAAATACTTTGAAAGGACTTTAACACACTTCAATGGAGAAGTCCAGCCTGGACGAAGGTGCATGCTAAGAGGATTCCGGCTGCAGAAATGCCCTTATTGGGTTAGGCCATCCATTACAATTTCTGATCATAGTGGAATTCTTTTCACAACGAGAAAGCATCCCAAGACAAAGGATCTAATGCCTGAAGATTTCTGGATCAATGCACCGAAGAAAGGAATTGTGGTCTTTGCATTACCAGGGGAACCTGGTCTGACAGAATTGGTTGGGGACttcaaaattcattttcatgatCGACAGGGAGATTTCTTCTGTTGGATGAATACAACAATGATAGAGAACAGAACAATTTTAGATGGCTTGGATCTTGATGATTTTGACAAGAGAAAGATCCCCGCTCCAGGGTTTCAGGTCGAAGTTGTGATGGTAGACTATAATGGCACCTTGCCTACTAAAGTCAATCCTGCAAGCAAAGGATCTGGCAACACAAGCAATGTCTTATCCGGTGCAAAGCCTACATCTAATTCAAGCGAGAGTAAGGTTACAAATGGAGATGATGATGTATTCTCAGATAGTGACGAGGAGGAGACCAAGGGAACAAAAAGGAGGGAAGCTGCAAATGATTACAAATATATGGAACCACAACAAGTATCTGAGGCCACTACTGAGCCTGTAGGGATGTTGGCACATGCAACGGATCGGTTGTCACTCCAGCATGAGGAACGTACAGAAAACCATGCTTCTGAAGCATCAACTACAGATAAACTTCATAGTACTCATGCAGACCCTAACACAACCAACATGGAATCTTTAGGGTCAAGTGAATTCAAGGCAATTGCAGCAGATGcttcagttttttcttttggaGATGAAGATTTTGAGAGTGATTAA 1989 0.4193 MEPASAVTPPASDTEHSSTKVSAENSNARDSPSLSPTSGVSSRARNLGLGAADQNSQTENSGMSAFAVTQALIEPASAVTPPASNTEHSSTKVSAENSNARDSSSLSPTSGISSWARNLRLGAADQNSQTGNSGISAFVRLASGIGLRSPSNETAPGNSGAEQTNLIESFTKGLVDSSKSAVKAMQTKARHIVSQNKRRYQEDGFDLDMTYITENIISMGFPGGDLSSGIVGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVASFPFSDHNCPPIQLIASFCQSAHSWLKEDIQNVVVVHCKAGLGRTGLMICSLLLFLKFFTTPEEAIDYFNQKRCVDGKALVLPSQIRYVKYFERTLTHFNGEVQPGRRCMLRGFRLQKCPYWVRPSITISDHSGILFTTRKHPKTKDLMPEDFWINAPKKGIVVFALPGEPGLTELVGDFKIHFHDRQGDFFCWMNTTMIENRTILDGLDLDDFDKRKIPAPGFQVEVVMVDYNGTLPTKVNPASKGSGNTSNVLSGAKPTSNSSESKVTNGDDDVFSDSDEEETKGTKRREAANDYKYMEPQQVSEATTEPVGMLAHATDRLSLQHEERTENHASEASTTDKLHSTHADPNTTNMESLGSSEFKAIAADASVFSFGDEDFESD 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00584 662 MobiDBLite consensus disorder prediction 605 622 - -
Tsu05g00584 662 ProSiteProfiles Phosphatase tensin-type domain profile. 198 377 IPR029023 -
Tsu05g00584 662 ProSitePatterns Tyrosine specific protein phosphatases active site. 314 324 IPR016130 GO:0016311|GO:0016791
Tsu05g00584 662 SMART PTEN_C2_2 382 510 IPR014020 -
Tsu05g00584 662 MobiDBLite consensus disorder prediction 560 575 - -
Tsu05g00584 662 Gene3D Protein tyrosine phosphatase superfamily 183 380 IPR029021 -
Tsu05g00584 662 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 312 351 IPR000387 GO:0016311|GO:0016791
Tsu05g00584 662 MobiDBLite consensus disorder prediction 1 61 - -
Tsu05g00584 662 MobiDBLite consensus disorder prediction 623 639 - -
Tsu05g00584 662 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 78 662 - -
Tsu05g00584 662 MobiDBLite consensus disorder prediction 605 639 - -
Tsu05g00584 662 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 78 662 - -
Tsu05g00584 662 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 211 377 IPR029021 -
Tsu05g00584 662 MobiDBLite consensus disorder prediction 79 112 - -
Tsu05g00584 662 CDD PTP_PTEN 208 372 IPR045101 GO:0016791
Tsu05g00584 662 ProSiteProfiles C2 tensin-type domain profile. 384 511 IPR014020 -
Tsu05g00584 662 MobiDBLite consensus disorder prediction 517 588 - -
Tsu05g00584 662 MobiDBLite consensus disorder prediction 78 112 - -
Tsu05g00584 662 MobiDBLite consensus disorder prediction 10 61 - -
Tsu05g00584 662 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 454 508 IPR035892 -
Tsu05g00584 662 MobiDBLite consensus disorder prediction 517 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00584 Tsu-Chr5 4817662 4824494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00584 75 662 Protein tyrosine phosphatase (PTP) family AT3G19420 58.824 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00584 K01110 - gmx:100801622 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00584 05 4817662 4824494 Tsu05g00584 05 4817662 4824494 ECH
Tsu05g00584 05 4817662 4824494 Tsu01g04765 01 54787822 54790554 PCT