Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00580 atgaacACAGCAATAACAAGAAAAGAAATGGATCGGATTAAAGGTCCATGGAGTcctgaagaagatgaagcacTACAAAAGCTTGTTGAAAAACACGGTCCGAGAAACTGGTCGATTATAAGTAAATCGATACCAGGTAGGTCTGGGAAATCGTGTAGGCTTCGTTGGTGTAATCAGCTTTCACCACAAGTTGAACATCGGGCTTTTACACCTGAAGAAGATGATACTATTATCAGAGCCCATGCTCGATTTGGAAATAAATGGGCTACGATTGCTAGGCTTTTATCGGGCCGAACTGATAACGCTATTAAAAATCATTGGAACTCTACTTTGAAACGTAAGTGTTGTTCTAGTATGGTTGATGAATCTCCACCGTTGAAAAGATCTGTTAGTGCTGGTGCTGCTATTCCTGTTTCTACTGGTCTTTATATTAACCCTCCTTCACCGCCTAGTTCTCCTTCTGGATCCGATGTGAGCGAGTCCAGCGTACCTATCGTAAACCCTATCGTGAACACCTCTCATGTTTACCGTCCGGTGCCGACGAGGACTGTTACGGTTCTACCTCCGGTAGAAACGACGTCGTCTTCCAAATCATCAAAATCTCCAAAATCAAATGATCCACCAACTTCATTATCACTCTCACTTCCCGGAGTTGATTCTTCGTCGGAAGATTCAAACCGTGTGACTGAGCCGTCTGTGAAGAACTCTGCTCCACCGCCTCCTCCACCACCTCCAAGTGCTATTCCTTTGATTCCGATAATGACAGCAGCTGTTCCAGTTTCTGTTCCGATGGCGGTTCCAATGATGCAGCAATTTAACGATCCGGCAGCGGCCGCTACTGCGAGAGGATCCGCGGTGCCGTTCAATTTTAGTGCGGAGTTGTTGACTGTGATGCAGGAAATGATAAGGACGGAGGTGAGGAATTATATGGCGGGATTGGAGCAACAGAATGGGATGTGTATTGCTGATGATGGTTATAGGAATGCTTCTGTGAAGCGAATTGGAATTAGCAGGATCGATTCGTAA 1026 0.4435 MNTAITRKEMDRIKGPWSPEEDEALQKLVEKHGPRNWSIISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCCSSMVDESPPLKRSVSAGAAIPVSTGLYINPPSPPSSPSGSDVSESSVPIVNPIVNTSHVYRPVPTRTVTVLPPVETTSSSKSSKSPKSNDPPTSLSLSLPGVDSSSEDSNRVTEPSVKNSAPPPPPPPPSAIPLIPIMTAAVPVSVPMAVPMMQQFNDPAAAATARGSAVPFNFSAELLTVMQEMIRTEVRNYMAGLEQQNGMCIADDGYRNASVKRIGISRIDS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00580 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Tsu05g00580 341 Gene3D - 67 130 - -
Tsu05g00580 341 SMART sant 13 62 IPR001005 -
Tsu05g00580 341 SMART sant 65 113 IPR001005 -
Tsu05g00580 341 CDD SANT 68 111 IPR001005 -
Tsu05g00580 341 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Tsu05g00580 341 PANTHER MYB PROTEIN-RELATED 5 312 - -
Tsu05g00580 341 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 5 312 - -
Tsu05g00580 341 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Tsu05g00580 341 MobiDBLite consensus disorder prediction 186 246 - -
Tsu05g00580 341 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Tsu05g00580 341 Pfam Myb-like DNA-binding domain 17 74 - -
Tsu05g00580 341 MobiDBLite consensus disorder prediction 186 233 - -
Tsu05g00580 341 Gene3D - 13 65 - -
Tsu05g00580 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Tsu05g00580 341 CDD SANT 16 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00580 Tsu-Chr5 4793938 4795619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00580 6 340 MYB Transcription Factor Family AT4G37260 48.087 1.58e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g00580 Myb_DNA-bind_6 3.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00580 K09422 - gmx:780556 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00580 05 4793938 4795619 Tsu04g02127 04 23522825 23524240 ECH
Tsu05g00580 05 4793938 4795619 Tsu05g00580 05 4793938 4795619 ECH
Tsu04g02127 04 23522825 23524240 Tsu05g00580 05 4793938 4795619 PCT