Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00570 atgtCTCATcgacaaaaccaaaaccaacaACCACTTTTAGAACAACAAGAAGAGGAAGAAACCGCTTATGATTCATCGGAGAAGATAGTTATTATAGGAGATGAAGAATACGAAGCTGACGTGGACGCCGGAGTAAGAATTCCACCTTTTTCATGGAAAAAACTATGGTTATTCAGTGGTCCAGGTTTTCTAATGAGTATAGCTTTTCTGGATCCTGGAAATTTGGAAGGAGATCTTCAATCTGGTGCAATTGCTGGTTACTCATTGTTATGGCTTCTTATGTGGGCTACAGCTATGGGACTTCTTATTCAGTTATTATCAGCAAGATTAGGTGTTGCTACTGGAAGACATTTGGCTGAACTTTGTAGAGATGAGTATCCTACTTGGGCTAGGATTGTTCTTTGGTTGATGACTGAAGTTGCTCTTATTGGTTCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTATTAGGATTTTGAGTAATGGTTATGTTCCTCTTTGGGCTGGTGTTGTTATTACTGCTTTAGATTGTtttatctttctctttcttGAGAACTATGGTGTGAGGAAATTGGAAGCATTTTTTGCTGTTCTTATTGCTATAATGGCTCTCTCCTTTGCATGGATGTTTGGCGAAGCAAAGCCTGATGGTGTTGATGTTCTTGTTGGTATTTTGGTCCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTTGGTTGCATTATTATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCAAGACAGGTTGACCCGAAAAAGAAAGGCCGTGTTCAAGAAGCTCTTAATTACTACTCAATAGAGTCCACCATTGCGCTTGTTGTCTCCTTTGtgattaatatatttgtcaCAACTGTGTTTGCTAAGGGCTTTTATGGTACTGAAATAGCAAATAGGATCGGTCTCGTAAATGCAGGGCAGTACCTTCAAGAGAAGTATGGAGGTGGAGTATTCCCGATCCTGTATATATGGGGTATTGGGTTATTAGCAGCTGGTCAGAGTAGCACTATTACTGGTACATATGCTGGACAGTTCATCATGGGGGGTTTTCTGAATTTGAAGTTGAAAAAATGGATGAGGGCGTTGATTACGCGGAGCTTTGCAATCGTCCCGACTATGATAGTTGCGCTTATATTTGATACCTCAGAGGAATCATTAGATGTTCTGAATGAATGGCTTAATGTTCTTCAGTCAGTGCAAATTCCCTTTGCCCTGATTCCCTTGCTTTGTTTGGTATCGAAGGAACAAATAATGGGGACTTTCAAGATCGGCTCTGCCCTCAAGACCATTTCCTGGCTTGTGGCTGCACTGGTGATAGTGATAAATGGCTATCTTTTGCTGGAATTCTTTTCATCTGAAGTGAGTGGAGCAGTGGTAACCGCTATTGTGTCTGCAATAACTGCTGCATACGTTGCATTCATAGTTTACCTCATTTCAAGTGCCTTCGCATTTACACCTTGGAACAGTTTTACTCAATCAAAGACAGTAGCTTCCACGGAGAGTTGA 1545 0.3955 MSHRQNQNQQPLLEQQEEEETAYDSSEKIVIIGDEEYEADVDAGVRIPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCRDEYPTWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGYVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIAIMALSFAWMFGEAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPKKKGRVQEALNYYSIESTIALVVSFVINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWMRALITRSFAIVPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGSALKTISWLVAALVIVINGYLLLEFFSSEVSGAVVTAIVSAITAAYVAFIVYLISSAFAFTPWNSFTQSKTVASTES 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00570 514 MobiDBLite consensus disorder prediction 1 25 - -
Tsu05g00570 514 Hamap Divalent metal cation transporter MntH [mntH]. 41 463 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g00570 514 MobiDBLite consensus disorder prediction 1 16 - -
Tsu05g00570 514 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 10 514 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g00570 514 Pfam Natural resistance-associated macrophage protein 76 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g00570 514 PRINTS Natural resistance-associated macrophage protein signature 134 160 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g00570 514 PRINTS Natural resistance-associated macrophage protein signature 164 183 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g00570 514 PRINTS Natural resistance-associated macrophage protein signature 189 210 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g00570 514 PRINTS Natural resistance-associated macrophage protein signature 238 261 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g00570 514 PRINTS Natural resistance-associated macrophage protein signature 345 364 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g00570 514 PRINTS Natural resistance-associated macrophage protein signature 373 390 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g00570 514 PRINTS Natural resistance-associated macrophage protein signature 407 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g00570 514 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 10 514 - -
Tsu05g00570 514 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 53 431 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00570 Tsu-Chr5 4658273 4662005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00570 5 500 Inorganic Solute Cotransporters AT2G23150 80.600 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00570 K21398 - gmx:100807811 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00570 05 4658273 4662005 Tsu05g00570 05 4658273 4662005 ECH
Tsu05g00570 05 4658273 4662005 Tsu04g02149 04 23726097 23728992 PCT