Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00561 ATGGTAACCCAAACTGGTGTTCTTAAAGTTTTACAAGATAAAAAGTATAAGCTTTTAACAACCCGAACTCCAGAGTTCCTTGGACTCGATAGAATTCATGTCATGTTTCCtgcatcaacatcatcaagtaGAAGCATGGAGGACATAATTGTTGGTGTTATAGACTCTGGAGTTTGGCCTGAAAGCAAGAGCTTTGACGATACCGGATATGGTCCAATTCCCACAACATGGAAAGGAAAGTGTGAAATAGGTACCGATTTCACAGTTTCAAACTGTAATAAGAAATTGATCGGTGCAAGGTTCTTTTTGAAGGGCTATGAGGCTGATAAGGGTAGTCCGATCAATGAAACCAAGGAATCTAGGTCGCCACGAGACACTAAGGGCCATGGAACCCACACAGCTAGCATATCAGTTGGATCTCCGGTGAGAAATGCAAGTCTTTTCGGTTATGCTGCCGGTACAGCACGTGGGATGGCCCCAAGGGCCAGAGTTGCTATCTACAAGGTTTGCTGGGAAGGTCATGCTTGTTTAGGTTCTGATTATCTAGCTGCAATAGATCAGGCTATCATTGACAAAGTCAATGTACTTTCGTTGTCGCTCGGATTTACTCCACTGGATTATGTAGAGGACCCCCTCGCAATCGGAGCCTTTGCAGCAATGGAGCATGGGATTCTAGTATCTTGTGCGGGAGGAAACTCAGGTCCCCGTGCTTCTTTGATCACCAATGTAGCACCTTGGATTACCACAGTGGGAGCTGGCACTCTCGACCGAGATTTCCCTGCATATATCACTCTCGGAAACAGTCAGAATTATACAGGAATATCACTTTATAATGGTAGTTCTTTTCCCGATACTTCTATGTCGTTAATATACGCAGGGAATGCAAGCATTCCTGGTGAAAAAGAAAACGCTAGAAAGTGTGTGGGAGGAAgcttagacaaaaaaaaagtagaaggTAAGATTGTAATGTGTGAGTCTGGATTCCTTACTGGGCCGGAGAAAGGAAATACAGTAAAATCACTTGGTGGTTTGGGCATGGTATTGGCCACCTTGGATTACGATGAAGAGGAGCTGTTGGCAGAACCTCATATTTTGCCGACAATAGTGGTTAAATTCAAAGATGGTGAAGCCATCAAGAAATACCTGTTTTCCCAAAATCCAAATAACTCGATGGCTACGGTTGTATGTGAAAGAACACAGTTTAAGGTTGAGCCATCTCCCGTTGTTGCGATGTTTAGTTCACGAGGCCCCAATTCAATAACCCCACAAATATTGAAGCCTGATTTCATTGCTCCCGGTGTTAATATCTTGGCAGCATTTAGTAGGAAAGCGAGTCCCACTAGTGAGGATTGGGATCCAAGGCGCGTGGATTTTAACATTTACTCAGGCACGTCCATGGCATGCCCTCATGTGAGCGGGATAGCAGCTCTAATCAAATCGATTCACCCAGATTGGAGCCCAGCCGCCATTCGATCTGCACTGATGACTACGGCTTATACCGCTTACAAGAACGGAAAGACATTGTTGGACGGTACTAACAAAAAGCCAGCGACACCGTTTGATTTTGGGGCTGGACATGTGGACCCTGTTCTTGCACTAAATCCCGGACTTGTCTATGATCTGACGGTGGACGACTATTTGAGCTTCCTCTGCGCATTAAACTACTCAGCTGCTGATATTGAAGTTGTGGTGAGGAGAAAGTTCACATGTGACCCAAAGAAACAGTACAGTGCAACAAACCTTAATTACCCTTCATTTGCTGTAGTCTTTAATGGTGGTCAAGGTACAGAGGAGATTAAACACACGCGGACTCTTACTAATGTGGGTGCGGAAGGAACATATAAGGTATCAATTAAGTCAGATGCTGCGTTTGTGAAGATCTCGATTGAACCAAAAGTGTTAAGTTTCAAGACAAAAGAGAAAAAGTTATACACTATTACATTTAGCACATCTGGTTCGAAGCCAAATAGCTCTCAAAGTTTTGGAAGTTTGGAATGGTCTGACGGAAATTCTATTGTTAGGAGTCCCATAGCATTTAGCTGGAAATGA 2049 0.43 MVTQTGVLKVLQDKKYKLLTTRTPEFLGLDRIHVMFPASTSSSRSMEDIIVGVIDSGVWPESKSFDDTGYGPIPTTWKGKCEIGTDFTVSNCNKKLIGARFFLKGYEADKGSPINETKESRSPRDTKGHGTHTASISVGSPVRNASLFGYAAGTARGMAPRARVAIYKVCWEGHACLGSDYLAAIDQAIIDKVNVLSLSLGFTPLDYVEDPLAIGAFAAMEHGILVSCAGGNSGPRASLITNVAPWITTVGAGTLDRDFPAYITLGNSQNYTGISLYNGSSFPDTSMSLIYAGNASIPGEKENARKCVGGSLDKKKVEGKIVMCESGFLTGPEKGNTVKSLGGLGMVLATLDYDEEELLAEPHILPTIVVKFKDGEAIKKYLFSQNPNNSMATVVCERTQFKVEPSPVVAMFSSRGPNSITPQILKPDFIAPGVNILAAFSRKASPTSEDWDPRRVDFNIYSGTSMACPHVSGIAALIKSIHPDWSPAAIRSALMTTAYTAYKNGKTLLDGTNKKPATPFDFGAGHVDPVLALNPGLVYDLTVDDYLSFLCALNYSAADIEVVVRRKFTCDPKKQYSATNLNYPSFAVVFNGGQGTEEIKHTRTLTNVGAEGTYKVSIKSDAAFVKISIEPKVLSFKTKEKKLYTITFSTSGSKPNSSQSFGSLEWSDGNSIVRSPIAFSWK 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00561 682 Pfam PA domain 307 378 IPR003137 -
Tsu05g00561 682 MobiDBLite consensus disorder prediction 113 137 - -
Tsu05g00561 682 MobiDBLite consensus disorder prediction 113 128 - -
Tsu05g00561 682 ProSiteProfiles Serine proteases, subtilase domain profile. 26 533 - -
Tsu05g00561 682 Gene3D - 550 681 - -
Tsu05g00561 682 PANTHER TRIPEPTIDYL-PEPTIDASE II-RELATED 4 680 - -
Tsu05g00561 682 Pfam Fibronectin type-III domain 580 678 IPR041469 -
Tsu05g00561 682 PRINTS Subtilisin serine protease family (S8) signature 125 138 IPR015500 -
Tsu05g00561 682 PRINTS Subtilisin serine protease family (S8) signature 46 65 IPR015500 -
Tsu05g00561 682 PRINTS Subtilisin serine protease family (S8) signature 462 478 IPR015500 -
Tsu05g00561 682 CDD PA_subtilisin_like 262 394 - -
Tsu05g00561 682 Gene3D Peptidase S8/S53 domain 48 546 IPR036852 GO:0004252|GO:0006508
Tsu05g00561 682 CDD Peptidases_S8_3 16 499 IPR034197 -
Tsu05g00561 682 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 4 680 IPR045051 -
Tsu05g00561 682 ProSitePatterns Serine proteases, subtilase family, serine active site. 463 473 IPR023828 -
Tsu05g00561 682 Gene3D - 256 402 - -
Tsu05g00561 682 SUPERFAMILY Subtilisin-like 18 537 IPR036852 GO:0004252|GO:0006508
Tsu05g00561 682 Pfam Subtilase family 48 525 IPR000209 GO:0006508|GO:0008236
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00561 Tsu-Chr5 4590956 4593068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00561 1 681 Subtilisin-like Serine Gene Family AT5G67360 60.380 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00561 - - gmx:100801866 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00561 05 4590956 4593068 Tsu05g00561 05 4590956 4593068 ECH
Tsu05g00561 05 4590956 4593068 Tsu04g02158 04 23806362 23809183 PCT