Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00559 ATGACTAATCTCGCTGGTTACAGCACCACTAATCAGAGACCAATTTCTCTGATATCAATTATGCCAAACACCACCGTTCCGTCGCGCTACGTCGTCGTTTTCACATTTCGAAGTTCCCAAAAACATGGATTCAGTACTTCTTCTGAATCAGTTTGGACAGATTATCCCATAGAGAACGCGTACGAGCTTCTAGAAGTATCTGAAACAAGCTCATTCGATGAGATCAAAGCATCATTTCGTAAATTAGCGAAAGAAACTCACCCTGACCTCGCTGAGTCAAGGAACGATTCCACTGCTTCACGacggtttgttcaaattcttgCCGCATATGAGATTCTTTCAGATTCTCGGAAGAGAGCCCATTATGACATGTACTTGTTATATCAGAAAAAGGTTATGCAGAAGCATTCTGAACAGGGTTCAAAATTGCGCATTTATGAATCACAGGCTGCGACATTCAATGAGATGGAAGTTGTTGAATGGTTAAAGTGGTACAGATTAGCTATAAATGATATTTTGTCAGAGAAGAAAGTGGTGGTTGGAACAGGATATTTTGATGTACTCGAAAGAGATTTTTATTCTGCTATTCATGCAGCATACTATGGTCCCGAAATTGATTCTATCCCTATGGAGTTTCTTCCTGACTGCTTTGAGGCTGAGGAGAGGTCCTCTTATGAAACTCCTGAGGTTTTGCACTTGGTTTCCGGCCGTGATCTTTTTGGGATGGTTTGCCTAGTCAACAAGATTCCAGAGATATCATCTACTGAAAATGAAAAGTTAACTTCTTATACACCCTTCCATTCAGGCCTTTGTCAATCTATTACGGATGTGGATACCTGCAGGAATGTAGAAAGGCCAGATAATTTTGTAACACAACAAAGCCGTAGctctaaaatttcaaataatgtTTCAGATGCGTATAGAGATCTAGAATTGCATGTCTCTGGAAAATTAGTTGCTACAGCATCTAGGGTCCTACGTAGATGTCGTTCTGATGTGATGCAAAAGGAAGATGCTGAAGATCACATTCATGTGTTCCTTAATTCAGATGAAGATCCCAGACATATCAGCAGTGACTTTTCAAGAAATTTATATGCAAATAGTACATTTGGAAGAAAAATGCATTTGGGAACCATATCTGGACTTGGGAGCAGTCCAGATGAAGGATGTTGTTATGTCTACAACAGCAGTTGTGAAAACACCCATGTGATTATGAAACACAGAACATTGTTGGTGAAGCATATGCACTGGTATCATGTTGGCGAGAAAGTTTCAGTTTGTGAGTGTAGATGCACCAGAGCACGTTTACCACCAAGCAAATTTTGGCTATTTGAGCCTCGTTGTGGCTTCCATGACATAGGGGGTTGCAAACCGAAAGAAGACTTCATCCAGCAATGTATCTGTTTGCTCTTGCATATCGAACACTTGATCTTGAATATGCCAAAACAAGCAAGAAAACATTTACGGATGCCGTTGGAACACATATGTTCCGAATGCTTCACTGGTGCAAGAAACTTGCTAAATAGAACGTTTCCCAGTTCATTTACAACTACACAATGA 1560 0.3955 MTNLAGYSTTNQRPISLISIMPNTTVPSRYVVVFTFRSSQKHGFSTSSESVWTDYPIENAYELLEVSETSSFDEIKASFRKLAKETHPDLAESRNDSTASRRFVQILAAYEILSDSRKRAHYDMYLLYQKKVMQKHSEQGSKLRIYESQAATFNEMEVVEWLKWYRLAINDILSEKKVVVGTGYFDVLERDFYSAIHAAYYGPEIDSIPMEFLPDCFEAEERSSYETPEVLHLVSGRDLFGMVCLVNKIPEISSTENEKLTSYTPFHSGLCQSITDVDTCRNVERPDNFVTQQSRSSKISNNVSDAYRDLELHVSGKLVATASRVLRRCRSDVMQKEDAEDHIHVFLNSDEDPRHISSDFSRNLYANSTFGRKMHLGTISGLGSSPDEGCCYVYNSSCENTHVIMKHRTLLVKHMHWYHVGEKVSVCECRCTRARLPPSKFWLFEPRCGFHDIGGCKPKEDFIQQCICLLLHIEHLILNMPKQARKHLRMPLEHICSECFTGARNLLNRTFPSSFTTTQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00559 519 ProSiteProfiles dnaJ domain profile. 59 126 IPR001623 -
Tsu05g00559 519 SMART dnaj_3 58 118 IPR001623 -
Tsu05g00559 519 CDD DnaJ 59 115 IPR001623 -
Tsu05g00559 519 PRINTS DnaJ domain signature 79 94 IPR001623 -
Tsu05g00559 519 PRINTS DnaJ domain signature 61 79 IPR001623 -
Tsu05g00559 519 PRINTS DnaJ domain signature 98 118 IPR001623 -
Tsu05g00559 519 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 25 455 - -
Tsu05g00559 519 Pfam DnaJ domain 59 123 IPR001623 -
Tsu05g00559 519 SUPERFAMILY Chaperone J-domain 56 130 IPR036869 -
Tsu05g00559 519 Gene3D DnaJ domain 52 146 IPR036869 -
Tsu05g00559 519 ProSitePatterns Nt-dnaJ domain signature. 103 122 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00559 Tsu-Chr5 4575239 4579826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00559 61 123 C2H2 Transcription Factor Family AT1G74250 43.939 6.32e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00559 - - mtr:MTR_5g016110 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00559 05 4575239 4579826 Tsu05g00559 05 4575239 4579826 ECH