Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00552 ATGGAACAAGAAcaacaatcaaatcaaatccCAATAACTACTACTCCATGTTCAGAATTTCCCACACCTAATAACTCTCTACAAAACTTCAGCAAAACCAATTGCATGGAACAGTTACTCGTTCAATGTGCCAATGCAATTGAAAGCAACAATGCAACACTAGCACAACAAATCCTTTGGGTCCTTAACAACACAACTCCACAAGACGGTGGCTCAAATCAACGCCTAGCCGGAAGCTTCATTCGAGCTCTCATAAATCGCGTGTCCAAAACCGGTAGTTGCAAAATGCTCGAAGCGGTTACAGAAACTGCAAGTAGTTATAACCATTGTAACAACCTTGATATGCAAATCCACAAATTTTCTGTTATTGAATTAGCCGATTTTGTTGATTTAACGCCTTGGCATCGTTTCGGTTTCAAAGCAGCTAATTCTACAATTGTAGAAGCTACTAAAGGATTTTCAGTTATTCACATTGTTGATTTGAGCTTAACACATTGCATGCAGATTCCTACTCTAATTGATGCCATTGCTAATCGCGATGAGGTTCCTCCTTTAATCAAGCTCACGGTCGCAGACTGTAGGAATATGAATATTCATATTCCAATTCCGCCTTTGCTTGATCTTTCTTATGACGAATTAGGTgcaaaattgattaattttgctAAATCAAAAAATGTGATTATGGAATTCAAAGCGATTTCTTCAACTTATGCAGATGGATTCGCTTCACTGATCGAACATCTACGTGTGCAAGTgcaacattataaaaaaactcaTGAAGCATTGGTTATAAACTGTCACATGATGCTTCATTATATTCCAGACGAATCTCTTTACGCAGTTAATGATACGAATAAGAATTCAAACTCTTCTTCGTCATTGCGATCAATGTTTCTAGAAGCTTTACGGAGTTTAGATCCAACAATTGTCGTTTTAGTGGATGAAGACGCGGATTTAACATCAAATGATTTGGTTTGTAGACTAAAATCCACGTTTAATTATCTTTGGATACCGTACGACATTATGGACACATTTTTACCACAAGGGGGTAAACAAAGACAGTGGTATGAGGCAGGTATTTGTTGGAAGATTGAGAATGTGATAGCATATGAAGGGATTGAGAGAGTTGAGAGGGTTGAGCCTAAAAGCAAGTGGGAACAACGAATGAGAAACGCGCATTTTCAAGGGATTTGTTTCGGTGAGGATTCGATTTTGGAAGTTAAGGCTATGCTTGATGAACATGCAGTTGGATGGGGATTGAAGAAAGAAGATGAGTTTCTTGTGCTTACTTGGAAAGGGAATAATGTTATCTTTGCATCTTCTTGGTTACCTTCTTGA 1338 0.3677 MEQEQQSNQIPITTTPCSEFPTPNNSLQNFSKTNCMEQLLVQCANAIESNNATLAQQILWVLNNTTPQDGGSNQRLAGSFIRALINRVSKTGSCKMLEAVTETASSYNHCNNLDMQIHKFSVIELADFVDLTPWHRFGFKAANSTIVEATKGFSVIHIVDLSLTHCMQIPTLIDAIANRDEVPPLIKLTVADCRNMNIHIPIPPLLDLSYDELGAKLINFAKSKNVIMEFKAISSTYADGFASLIEHLRVQVQHYKKTHEALVINCHMMLHYIPDESLYAVNDTNKNSNSSSSLRSMFLEALRSLDPTIVVLVDEDADLTSNDLVCRLKSTFNYLWIPYDIMDTFLPQGGKQRQWYEAGICWKIENVIAYEGIERVERVEPKSKWEQRMRNAHFQGICFGEDSILEVKAMLDEHAVGWGLKKEDEFLVLTWKGNNVIFASSWLPS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00552 445 Pfam GRAS domain family 36 442 IPR005202 -
Tsu05g00552 445 ProSiteProfiles GRAS family profile. 27 443 IPR005202 -
Tsu05g00552 445 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 443 IPR005202 -
Tsu05g00552 445 PANTHER SCARECROW-LIKE PROTEIN 32 14 443 - -
Tsu05g00552 445 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00552 Tsu-Chr5 4511501 4512838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00552 18 444 GRAS Transcription Factor Family AT3G49950 55.220 1.98e-165 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu05g00552 GRAS 9.4e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00552 - - mtr:MTR_3g053270 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00552 05 4511501 4512838 Tsu05g00552 05 4511501 4512838 ECH