Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00551 ATGAGTTGCAACGGTTGCCGTGTCCTTAGAAAGGGTTGTAGTGAGTCATGTATCTTACGCCCTTGTATTCAATGGATTGACACTCCTGAAGCCCAAGGTCATGCCACTGTCTTTGTTGCCAAATTTTTCGGCCGTGCAGACCTTATGTCTTTCATTTCCAACGTTCCCCAACCACAAAGACCcgCTCTGTTTCAATCTCTGTTGTTTGAAGCGTGTGGACGAACCGTTAACCCCGTTAACGGTGCCGTTGGACTTTTATGGACAGGAAACTGGCACGTGTGCCAAGCGGCGGTTGAAACAGTGCTCCGCGGCGGAACACTTAAACCCATACCGGAGCTTCTCGGCTTAGATGCTGTTACTTCAACCGTTGATGATTCATCCGAAGGTGAAGTCACGTGTAACGACGCGCGGAGGATCCGAGATCCGAATCCGAGTTTACGGTTCATGAGTTCTGGTGGTAAACGCAAACGATCGGGTGAAGTTGCGAAAGTTCAGGCGATGACGGATCTTAATCTTCGGATGACGCCACAGAACGCGTTGACCAACGGTTGCCGGAAGGAAATTCGCCGGTCCGGAACACCGTCGATGAATTCTGAGGAATCTGTGACGACGATGACGTGTTTGGAAAGTGGGGTCGGAGATCACTACGTTGATGATGGAGACCGCAAAGTTCTCAACCTTTTTGTTTGA 690 0.4986 MSCNGCRVLRKGCSESCILRPCIQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPQPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLKPIPELLGLDAVTSTVDDSSEGEVTCNDARRIRDPNPSLRFMSSGGKRKRSGEVAKVQAMTDLNLRMTPQNALTNGCRKEIRRSGTPSMNSEESVTTMTCLESGVGDHYVDDGDRKVLNLFV 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00551 229 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Tsu05g00551 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 229 - -
Tsu05g00551 229 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Tsu05g00551 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00551 Tsu-Chr5 4496591 4497951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00551 1 229 AS2 family AT3G49940 56.078 3.21e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu05g00551 LOB 9.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00551 - - gmx:100802764 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00551 05 4496591 4497951 Tsu04g02175 04 24035629 24036819 ECH
Tsu05g00551 05 4496591 4497951 Tsu05g00551 05 4496591 4497951 ECH
Tsu05g00551 05 4496591 4497951 Tsu01g04706 01 54381274 54382040 PCT
Tsu04g02175 04 24035629 24036819 Tsu05g00551 05 4496591 4497951 PCT