Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00543 ATGGCCATTAGGCCTTTCCAATCCACCTCCTCGCTCCATACATTCTTCTCTCTTTTCCGCACACCTAATCCATTTTCCTCCgccgccaccaccaccaccaacttTCCGCCACCCTATTCCATCCTCCGTCGCTTCACGCTATCGTCTTCAACTTCATTCTCACGACCTCCTCGCCGCCCTCAACCTCCTCCTCTTCCTCCTCTGCCACCGTCTGACACTCTGGCGCACAAGATCGGAAAAGCCATTCGCCTCCCTGGCGCCGCCTCTAAGGCCAGAGTTTATGCTGATATCAATGTTGTTCGCCCTAAGGAGTATTGGGACTATGAATCTCTCGCTGTTCAGTGGGGGGACCAAGATGATTATCAAGTTGTGAGAAAGGTTGGAAGAGGAAAATACAGTGAAGTGTTTGAGGGTGTTCACTGTACGGATAATGAAAAATGCGTTATCAAGATCCTGAAACCTgtcaagaagaagaagATAAAGAGGGAGATCAAGATATTGCAAAATCTATGTGGAGGGCCCAATATTGTAAAGTTGCTTGACATTGTTAGAGACCCGCAATCAAAGACCCCAAGCCTTGTATTTGAACATGTTAATAACATCGATTTTAAAGTGCTCTATCCTCACTTGTCAGATTATGATGTTCGATATTATATGTATGAACTTCTAAAGGCATTAGATTATTGCCACTCACAAGGAATCATGCATCGGGATGTAAAGCCGCATAATGTAATGATTGACCATGGGCAACGTAAGCTTCGCCTTATTGACTGGGGACTTGCGGAGTTTTATCATCCCGGGAAAGAATATAATGTCCGCGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTACTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGTCTCTCGGTTGTATGTTTGCTGGAATTATATTCCGGAAGGAGCCTTTCTTTTATGGACAAGATAATTATGATCAACTAGTGAAAATAGCCAAGGTACTTGGAACAGATGAGTTATATGCGTATCTGAACAAGTATCGCATAGAGTTGGACCCGCAGCTCTCGGTGCTTGTTGGGAGGCACGGTCGGAAGCCATGGACAAAGTTTATCGGTGCGGATACCAGACACTTGGCTGTTCCCGAGGCTATTGACTTTGTTGACAAGTTACTACGGTATGATCACGAAGAACGGCCCACTGCAAAAGAAGCTATGGCCCACCCCTACTTCAATCCAGTGAGAAGTGCTGAAAGTAGTAAAACGCATACACATTGA 1263 0.4347 MAIRPFQSTSSLHTFFSLFRTPNPFSSAATTTTNFPPPYSILRRFTLSSSTSFSRPPRRPQPPPLPPLPPSDTLAHKIGKAIRLPGAASKARVYADINVVRPKEYWDYESLAVQWGDQDDYQVVRKVGRGKYSEVFEGVHCTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDPQSKTPSLVFEHVNNIDFKVLYPHLSDYDVRYYMYELLKALDYCHSQGIMHRDVKPHNVMIDHGQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGIIFRKEPFFYGQDNYDQLVKIAKVLGTDELYAYLNKYRIELDPQLSVLVGRHGRKPWTKFIGADTRHLAVPEAIDFVDKLLRYDHEERPTAKEAMAHPYFNPVRSAESSKTHTH 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00543 420 PANTHER CASEIN KINASE II SUBUNIT ALPHA 70 412 IPR045216 GO:0004674|GO:0006468
Tsu05g00543 420 Pfam Protein kinase domain 121 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00543 420 Gene3D Phosphorylase Kinase; domain 1 113 170 - -
Tsu05g00543 420 Gene3D Phosphorylase Kinase; domain 1 174 197 - -
Tsu05g00543 420 PANTHER BNAA04G13490D PROTEIN 70 412 - -
Tsu05g00543 420 CDD STKc_CK2_alpha 102 406 IPR045216 GO:0004674|GO:0006468
Tsu05g00543 420 Gene3D Transferase(Phosphotransferase) domain 1 198 407 - -
Tsu05g00543 420 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Tsu05g00543 420 MobiDBLite consensus disorder prediction 50 72 - -
Tsu05g00543 420 ProSiteProfiles Protein kinase domain profile. 121 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00543 420 SUPERFAMILY Protein kinase-like (PK-like) 95 409 IPR011009 -
Tsu05g00543 420 SMART serkin_6 121 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00543 420 MobiDBLite consensus disorder prediction 56 71 - -
Tsu05g00543 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00543 Tsu-Chr5 4440525 4447884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00543 119 407 Core Cell Cycle Gene Families AT1G76540 30.255 8.88e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Tsu05g00543 Pkinase 7.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00543 K03097 - csv:101205903 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00543 05 4440525 4447884 Tsu05g00543 05 4440525 4447884 ECH