Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00542 ATGAGTGATAAATCATCAGTGCTTAAAGTTGTTGTTAGAGAATTTGAAGTTAATAAAGATAGAGAAAGAGTAGAAGAAGTTGAAAGGACATGTGAAGTTGGACCCAGTAATAAACTTTCTCTCTTCACCGACATGCTTGGTGACCCCATTTGTAGACTCCGTCATTCACCTTCTTATCTCATGCTGGTTGCTGAAATTGATAAAGAGATAGTTGGAATGATTAGAGGTTGCATCAAAACCGTTACATGTGGTAAAAAACTCTCAAGAAAATCAACTAAACAACTCCCTGTTTACACCAAACTTGCTTACATTTTAGGCCTTCGCGTTTCTCCTAATCAACGGAGAATGGGAATAGGCTTGAAGCTAGTAAAGAAAATGGAGGCATGGTTTAGAGATAACGGCGCTGAATATTCATACATGGCAACAGAAACTGAAAATTTAGCCTCCGTTAAACTCTTCACGGAAAAATGTGGTTATTCAAAGTTTCGTACACCGTCAATTCTCGTCAACCCCGTTTTTGCtcataaaactaaaatttcaCCAAACATCACTATCATTCCGTTAACTCCGTCAGATGCCGTTATTCTCTACCGTAACTGTTTTGCTACAACTGAGTTTTTTCCTTACGACATTGATGCTGTTCTtaataacaaacttaatctTGGTACATTTCTTGCCGTACCACATGGGTCCTATAATGTTGAAACGTGGCCCGGCCCAGATAGGTTTCTTTTGGGCCCACCATGTTCTTGGGCTATTTTAAGTGTTTGGAATTCTAAGGAAGTTTTCAAGCTTGAGGTACGTGGTGTGTCGCGCATGAGTCGTGCATTTTGTAAAACGACGCGGGTTTTGGATCGGGCTTTGCCGTGGTTGAAATTACCGTCGGTTCCAAATTTGTTTAGGCCTTTTgggtttcattttttatatggGATTGGTGGTGTAGGTCCAAAGAAGGTTAAGATGGTTAAGGCGCTTTGCGGGTTTGCCCACAATTTGGCTATGGAATGTGGGTGCGGGGTTGTGGCTACTGAGGTTGCTTCATGTGAACCGTTGAGGTTTGGGATACCTCATTGGAAAATGCTATCTTGCACGGAGGATTTGTGGTGCATTAAGAGGCTTGCTGAAGACTATAGTGATGGTTCTGTTGGTGATTGGACCAAATCTAAGCCCGAAATCTCCATTTTTGTGGACCCTAGAGAGGTTTAA 1206 0.403 MSDKSSVLKVVVREFEVNKDRERVEEVERTCEVGPSNKLSLFTDMLGDPICRLRHSPSYLMLVAEIDKEIVGMIRGCIKTVTCGKKLSRKSTKQLPVYTKLAYILGLRVSPNQRRMGIGLKLVKKMEAWFRDNGAEYSYMATETENLASVKLFTEKCGYSKFRTPSILVNPVFAHKTKISPNITIIPLTPSDAVILYRNCFATTEFFPYDIDAVLNNKLNLGTFLAVPHGSYNVETWPGPDRFLLGPPCSWAILSVWNSKEVFKLEVRGVSRMSRAFCKTTRVLDRALPWLKLPSVPNLFRPFGFHFLYGIGGVGPKKVKMVKALCGFAHNLAMECGCGVVATEVASCEPLRFGIPHWKMLSCTEDLWCIKRLAEDYSDGSVGDWTKSKPEISIFVDPREV 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00542 401 PANTHER N-ACETYLTRANSFERASE HLS1-LIKE-RELATED 8 400 - -
Tsu05g00542 401 Gene3D - 7 165 - -
Tsu05g00542 401 Pfam Acetyltransferase (GNAT) family 53 159 IPR000182 GO:0016407
Tsu05g00542 401 PANTHER N-ACETYLTRANSFERASE 8 400 - -
Tsu05g00542 401 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 50 162 IPR016181 -
Tsu05g00542 401 CDD NAT_SF 61 137 - -
Tsu05g00542 401 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 10 179 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00542 Tsu-Chr5 4429702 4431343 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Tsu05g00542 Acetyltransf_1 5.1e-18 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00542 - - gmx:100800613 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00542 05 4429702 4431343 Tsu05g00542 05 4429702 4431343 ECH
Tsu05g00542 05 4429702 4431343 Tsu04g02180 04 24115872 24117303 PCT