Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00535 ATGGGTAGTTTTGTTGACTCCCCTTTTTCTTTGTCTACTCTTCTCTGTCATGAACAAGATGAAACCACTTTCATCTTCCAAGAAAATGAAGATGACATTAACCCATGTTTTCTtttagatgatgaagaagaatacATTGATTATTTGTTCAAACAAGAAACAGGATTTGAATCCTTATcctatgatgatgattatgatgatgatgatgttgattcAACTAAAAGCTTATTCTGGTTTAGAAATGCTCGTTTACATGCTATTGATTGGATTTTCAATACACAAGCTAAATTTGGATTCACATATCAAACAGCTTATTTATCAATCACTTATTTTGATCGGTTTCTTTCAAAACGATCCATTGATGAATCTAAACCTTGGGCTATACAATTATTATCAGTGGCATGTTTATCAATTGCAGCAAAAATGGAAGAACAAAGAGTTCCTCCATTATCAGAATATCCAATAGAGTATAGATTTGAGAACAAAGTTATCAAAAATATGGAACTTTTGATTTTAAGTACTTTGGAATGGAAAATGGGATTACCAACCCCTTTTGCTTATTTGCATTATTTCTTCACCAAGTTCTGCAATGGATCAAGATTAGAAACAATAATCTCAAAAGCCACACAACACATTGTGACATTGGTCAAAGATTTTAATTTGATGAATCAAAAACCATCTATAATTGCTTCTGCTTCTATATTAGCAGCTTATGATTCCACATTaaccaaaaaagaaatggaTCTTAGGTTAAGTGTAATCTCATCATGGGGAAATCTAGAAAATGGACATGTATTTTCTTGTTACAATGTTATACAagaaaaaaggacaaacaaaGTTAAGAAGACACCTTCATCGGATTTATTATTATCAAAAGAGTCAAATTCCACATGTGAGAACAACTCTAATGGTTGTTTAGGAGTTAAGAGAAAGCTTAGTTATGAGAAAATTGAAGAATGTCAAAAACAAAAGCTACAAAGTCCTTAG 987 0.2857 MGSFVDSPFSLSTLLCHEQDETTFIFQENEDDINPCFLLDDEEEYIDYLFKQETGFESLSYDDDYDDDDVDSTKSLFWFRNARLHAIDWIFNTQAKFGFTYQTAYLSITYFDRFLSKRSIDESKPWAIQLLSVACLSIAAKMEEQRVPPLSEYPIEYRFENKVIKNMELLILSTLEWKMGLPTPFAYLHYFFTKFCNGSRLETIISKATQHIVTLVKDFNLMNQKPSIIASASILAAYDSTLTKKEMDLRLSVISSWGNLENGHVFSCYNVIQEKRTNKVKKTPSSDLLLSKESNSTCENNSNGCLGVKRKLSYEKIEECQKQKLQSP 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00535 328 CDD CYCLIN 83 172 IPR013763 -
Tsu05g00535 328 Gene3D - 82 180 - -
Tsu05g00535 328 PANTHER CYCLINS 45 289 IPR039361 -
Tsu05g00535 328 SMART cyclin_7 88 173 IPR013763 -
Tsu05g00535 328 Pfam Cyclin, C-terminal domain 182 279 IPR004367 -
Tsu05g00535 328 Gene3D - 181 254 - -
Tsu05g00535 328 ProSitePatterns Cyclins signature. 83 114 IPR006671 -
Tsu05g00535 328 SUPERFAMILY Cyclin-like 35 179 IPR036915 -
Tsu05g00535 328 Pfam Cyclin, N-terminal domain 71 179 IPR006671 -
Tsu05g00535 328 PANTHER CYCLIN-D5-1 45 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00535 Tsu-Chr5 4359653 4361134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00535 10 262 Core Cell Cycle Gene Families AT4G37630 38.182 3.49e-46 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00535 K18811 - gmx:100798140 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00535 05 4359653 4361134 Tsu05g00535 05 4359653 4361134 ECH
Tsu05g00535 05 4359653 4361134 Tsu04g02182 04 24146377 24147754 ECH