Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00533 ATGGAGAATTTAATACATGAGGATTTTAGAGGAGTAAAGTCCAAAAACTCTTCTGATGAAGCTCTTCGAAGATGGAGAGATGTATGTGGATTCGTCAAGAATCCCAAAAGACGCTTTCGTTTTACTGCAAATCTTGACAAGAGAGGTGAAGCTGCTGATATGCGTCGTACCAATAagGAGAAATTGAGGGTGGTACTTTTGGTTTCCAAAGCAGCAATTCAATTTATCCAAGGTGCGAAACCTAGTGATTACAAAGTGCCGGAGGAAGTTAAAGATGCAGGATTTGAAATCTGTGGTGACGAATTGGGGTCTATTGTTGAAGGCCATGATGTAAAGAAGTTGAAATATCATGGTAGGGTTGATGGCATTGCTGAAAAGCTTTCTACATCAACCACTGAGGGGATTAGCAATGATACTGATTTACTGAATAGGAGACAACAGATATATGGAATCAATAAATTCATTGAAAGTCAAGCTAAAAGCTTCTGGATTTTTGTTTGGGAAGCCCTTCAAGACATGACTCTCATGATACTTGGAGTTTGTGCTCTTGTGTCTCTGATTGTTGGCATTGCAACAGAAGGATGGCCTAAGGGGGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTATTGGTTGTCTTTGTGACAGCAACGAGTGATTATCGCCAATCGTTACAGTTCAAGGATTTGGAcaaggaaaagaagaaaatttccATTCAGGTCACAAGAAACGGATATAGGCAGAAAATGTCTATATATGAATTACTTCCCGGTGATATCGTGCATCTTGCTATCGGTGACCAAGTTCCTGCTGACGGACTATTTCTTTCAGGATTTTCTCTGTTGATTGACGAGTCAAGTTTAACAGGAGAGAGTGAGCCCGTGGTGGTGAACACTGAAAATCCATTTCTTCTTTCCGGAACCAAGGTCCAAGATGGATCATGCAAGATGTTGATTACCACAGTTGGAATGAGGACTCAATGGGGTAAGTTGATGGCTACTCTCAGTGAAGGTGGTGATGATGAAACCCCATTACAGGTGAAACTTAATGGAGTGGCAACTATTATTGGGAAGATAGGCCTGTTCTTCGCCGTTATTACTTTTGCAGTTCTGATGAATGGACTTGTGAGCCTTAAACTCCAACAAGAAAGCTTCTGGAGCTGGAACGGTGATGATGCTTTGGAGATGTTGGAGTACTTTGCGATCGCAGTTACCATCGTTGTTGTTGCTGTTCCAGAAGGGCTTCCGTTAGCTGTGACATTGAGCCTTGCATTCGCtatgaaaaaaatgatgaatgaCAAAGCCCTTGTCCGAAATTTGGCAGCTTGCGAGACCATGGGATCAGCCACAACTATATGCAGTGATAAAACCGGGACCTTAACAACCAATCACATGACTGTTGTAAAAACATGCATTTGTATGGAAAGCAAAGAAGTGAGCAACAAGACTTCTAGTTTGTGCTCTGAACTCCCAGAATCTGCTGTGAAACTGCTGCTACAGTCAATATTTAACAACACAGGAGGAGAGGTTGTGGTTAACAAACAAGGGAAACACGAGATTTTAGGAACTCCAACTGAGACTGCGATATTGGAATTTGGCTTGTCATTAGGTGGTGATTTTCAAGGAGAGAGACAAGCATGCAAGCTTGTTAAAGTTGAGCCATTCAACTCTACTAAGAAAAGAATGGGTGTAGTGGTGGAGCTCCCTAGTGGAGGTTTAAGAGCGCACTGCAAAGGAGCTTCTGAAATAGTTCTTGCTGCTTGTGACAAAGTTCTCAATTCAAATGGTGAGGTTGTCCCACTTGATGAAGAATCAACTAACCATCTTACGACTACGATAAACCAGTTTGCTAACGAGGCACTTAGAACTTTATGCCTTGCCTATATGGAATTGGAAAATGGTTTCTCTGCTGAAGACACCATTCCTGTTACTGGATTCACTTGTATTGGAATTGTTGGCATCAAAGATCCTGTTCGTCCTGGTGTCAAGGAGTCTGTAGCACTATGTCGTTCAGCTGGAATAACAGTAAGAATGGTCACTGGTGACAATATTAATACTGCAAAGGCTATAGCCAGGGAATGTGGAATCTTAACAGATGATGGCATAGCCATTGAAGGTCCAGAATTTAGAGAGAAGAGTCTGGAAGAGTTGCTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCCTCGCCTTTAGACAAGCATACATTGGTGAAACACCTGCGTACGACGTTTGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCGGCCCTTCATGAAGCAGACATTGGACTTGCTATGGGCATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACAATAGTAACGGTGGCCAAATGGGGACGTTCCGTTTACATAAATATTCAGAAATTTGTACAGTTTCAGCTTACAGTTAATGTGGTTGCTTTAATAGTGAACTTTACATCAGCCTGCTTGACAGGTTAG 2511 0.4154 MENLIHEDFRGVKSKNSSDEALRRWRDVCGFVKNPKRRFRFTANLDKRGEAADMRRTNKEKLRVVLLVSKAAIQFIQGAKPSDYKVPEEVKDAGFEICGDELGSIVEGHDVKKLKYHGRVDGIAEKLSTSTTEGISNDTDLLNRRQQIYGINKFIESQAKSFWIFVWEALQDMTLMILGVCALVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFLSGFSLLIDESSLTGESEPVVVNTENPFLLSGTKVQDGSCKMLITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLMNGLVSLKLQQESFWSWNGDDALEMLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMESKEVSNKTSSLCSELPESAVKLLLQSIFNNTGGEVVVNKQGKHEILGTPTETAILEFGLSLGGDFQGERQACKLVKVEPFNSTKKRMGVVVELPSGGLRAHCKGASEIVLAACDKVLNSNGEVVPLDEESTNHLTTTINQFANEALRTLCLAYMELENGFSAEDTIPVTGFTCIGIVGIKDPVRPGVKESVALCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSLEELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTG 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00533 836 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Tsu05g00533 836 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 49 IPR024750 GO:0005516
Tsu05g00533 836 Gene3D - 17 77 - -
Tsu05g00533 836 Gene3D - 212 312 - -
Tsu05g00533 836 PANTHER CALCIUM-TRANSPORTING ATPASE 8 836 - -
Tsu05g00533 836 Pfam E1-E2 ATPase 237 431 - -
Tsu05g00533 836 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Tsu05g00533 836 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 111 835 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Tsu05g00533 836 SFLD p-type atpase 435 805 IPR044492 -
Tsu05g00533 836 SUPERFAMILY HAD-like 451 827 IPR036412 -
Tsu05g00533 836 SFLD Haloacid Dehalogenase 435 805 - -
Tsu05g00533 836 Gene3D - 463 653 IPR023299 GO:0000166
Tsu05g00533 836 Gene3D - 313 457 - -
Tsu05g00533 836 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166
Tsu05g00533 836 Gene3D - 654 802 IPR023214 -
Tsu05g00533 836 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu05g00533 836 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu05g00533 836 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu05g00533 836 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 835 IPR023298 -
Tsu05g00533 836 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Tsu05g00533 836 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Tsu05g00533 836 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Tsu05g00533 836 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Tsu05g00533 836 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Tsu05g00533 836 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Tsu05g00533 836 Pfam Cation transport ATPase (P-type) 513 591 - -
Tsu05g00533 836 Pfam Cation transporter/ATPase, N-terminus 117 185 IPR004014 -
Tsu05g00533 836 Pfam haloacid dehalogenase-like hydrolase 649 767 - -
Tsu05g00533 836 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 724 833 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu05g00533 836 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 205 483 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu05g00533 836 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 545 698 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu05g00533 836 PANTHER CATION TRANSPORTING ATPASE 8 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00533 Tsu-Chr5 4325973 4332063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00533 1 836 Primary Pumps ATPases AT4G37640 82.796 0.0 1416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00533 K01537 - gmx:100792691 1470.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00533 05 4325973 4332063 Tsu05g00533 05 4325973 4332063 ECH
Tsu05g00533 05 4325973 4332063 Tsu04g02183 04 24148513 24152771 PCT