Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00527 ATGGATACATTGTTTAGACTTGTCAGTTTTCAACACCAACACCAACCTGATATTCATCATCAATCTCTCAACTCTACAACAAGCATAACAACAACTTCTAGTAGCTCTAAATCTTCTAAACAAAACTATCACCAAAATCATTACTACGAACAACAACATCAAGAAGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTTTCCTCATCTTCTTCTAAACACTACTATCCTTATAATCAACCTTCCACCACAATTACTACTCACACCCCCACACCTACACCAACGCCGCCACCACCGACCGATTTCACCTTTGAATTAACCGGTAAGTGGGCCCATAACATCCTTCTTGAGACAGCACATGCTATAGCTGAAAAAAATACAACTCGTTTACAACAACTTATGTGGATGCTTAATGAACTGAGTTCTACTTACGGAGACACGGAACAAAAACTCGCGGCTTATTTTCTACAAGGCTTGTTTTCTCGAATGACCGAAGCTGGTACTCGAACCTTTCGAACCCTAGCTTCAGCATCGGAGAAAACTTGCTCATTTGAATCAACAAGAAAAACGGTTTTGAAATTTCAAGAAGTTAGTCCTTGGACTACTTTTGGTCATGTCGCGTGCAATGGCGCAATTTTAGAAGCCTTAGAAGGAGATTCTAGATTGCATATAATTGATATAAGTAACACTTATTGCACTCAATGGCCTACGCTTTTCGAAGCGTTGGCCACTCGCACTGACGATACTCCTCATCTTCGGTTGACCACCGTTGTAACCGCTAGTGGCTCAGTTCAAAAAGTTATGAAAGAAATTGGTTCAAGATTGGAGAAATTTGCCAGACTTATGGGAGTTCCATTTAAATTCAATGTTATTCATCACGCCGGTGATCTTTCCGATTTAGATTTCTCCCATTTAGATATTAAAGAAGATGAAGCTTTAGCTGTTAATTGTATTAATGCTTTGCATTCAATTACCATTGGTAATAGTAATGATAACCGGCGTGACGCATTAATAACCAAGTTAATCGCGTTGCGGCCAAGAATAGTGACGGTGGTGGAGGAGGAAGCTGATTTGGATTTTGGTTATGAAGGATATGAATTTGTAAGAGGTTTTGAAGAATGTTTAAGATGGTTTAGGGTTTATTTTGAAGCATTAGAAGAAAGTTTTACGAAGACGAGTAACGAGCGGTTAATGTTGGAAAGGGAAGCCGGAAGAGGGATAGTTGATTTGGTTGCATGTGCTCCGGCGGAGTCGATGGAACGGAGAGAAACGGCGGTGAGATGGTGTCAACGTTTGCATGGTGGAGGGTTTAATACGGTGGCGTTTAGTGAAGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGAAGGTATAAAGAAGGGTGGTCGATGACACGGTGCAATGACGCCGGAATATTCTTGACGTGGAAGGAACAGCCGGTGGTTTGGGCTAGTGCATGGAGGCCATGA 1470 0.4122 MDTLFRLVSFQHQHQPDIHHQSLNSTTSITTTSSSSKSSKQNYHQNHYYEQQHQEEECFNFFMDEEDLSSSSSKHYYPYNQPSTTITTHTPTPTPTPPPPTDFTFELTGKWAHNILLETAHAIAEKNTTRLQQLMWMLNELSSTYGDTEQKLAAYFLQGLFSRMTEAGTRTFRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVACNGAILEALEGDSRLHIIDISNTYCTQWPTLFEALATRTDDTPHLRLTTVVTASGSVQKVMKEIGSRLEKFARLMGVPFKFNVIHHAGDLSDLDFSHLDIKEDEALAVNCINALHSITIGNSNDNRRDALITKLIALRPRIVTVVEEEADLDFGYEGYEFVRGFEECLRWFRVYFEALEESFTKTSNERLMLEREAGRGIVDLVACAPAESMERRETAVRWCQRLHGGGFNTVAFSEEVCDDVRALLRRYKEGWSMTRCNDAGIFLTWKEQPVVWASAWRP 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00527 489 Pfam GRAS domain family 114 488 IPR005202 -
Tsu05g00527 489 PANTHER PROTEIN SHORT-ROOT 1 488 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Tsu05g00527 489 ProSiteProfiles GRAS family profile. 103 488 IPR005202 -
Tsu05g00527 489 MobiDBLite consensus disorder prediction 14 44 - -
Tsu05g00527 489 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 488 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00527 Tsu-Chr5 4283583 4285289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00527 1 489 GRAS Transcription Factor Family AT4G37650 57.914 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu05g00527 GRAS 6.2e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00527 - - gmx:100820459 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00527 05 4283583 4285289 Tsu05g00527 05 4283583 4285289 ECH
Tsu05g00527 05 4283583 4285289 Tsu04g02186 04 24240047 24241460 PCT