Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00514 ATGAATCAAATGAATTCAATGAAAATGAATATGGGTGGTTTATTCAGTAATCCATCTAAAAGGGATATGGTTGTTGGTTTTGAGGGTGGTGGGGATGGTCAGATTCTAGATCTGGACACTGCTGTTAAAGATGGTGTCTTGGGTGGTGTTGACGGTGGTGTTGTTGGAACTGGTGTTGGTGAGAAATTAGATCTGAGAAAAATGATTCAAGAGCTTGATTTATGTGAAGTACCAACTGTTTTCATTTGTCCAATCTCTCTTGAACCAATGCAAGACCCTGTTACTCTTTGCACTGGACAAACCTATGAGAGGAACAACATTCTCAAATGGTTTAACCTAGGACACTTCACATGTCCTACAACTATGCAAGAGCTTTGGGATGATTCAATCACTCCAAACACAACTCTTTATCGGTTAATTTAtacttggttctctcagaagTACTTGTTGATGAAGAAGAGGTCTGAAGATGTTCAAGGAAGAGCTTCTGAGCTTGTGGAGACACTCAAGAAGGTGAAAGGTCAAGCTCGTGTTCATGCTTTGAAGGAACTTCATCATGTTGTGGCTGTTCATGCCACTGCTCGTAAGTCTGTCATTGATGGAGGTGGTGTTTCTGTTTTATCTTCTTTACTTGGTCCTTTTACTTCACATGCTGTTGGTTCTGAAGTTATTGGTATTCTTGTTAGTTTGACACTTGATTCTGAATCCAAAAAGAATCTTATGCAACCTGCTAAGATTTCATTGATGGTTGACATCTTGAATGAGGGTTCAATCGAGACTAAAATCAATTGCACGCGGTTGATTGAATCGTTAATTGAGGAAAAAGATTTTCGTTCCGAGATTATCTCCAGCCATAGTCTATTGGTTGGATTGATGAGGCTTGTTAAGGATAAGAGACACAGCAATGGAATCTGTCCTGGATTAAGCCTCCTCAGAACAGTGTGCTTCTATAAAGAAGTTAAGATTTTGTTAGTTAGCATTGGTGCTGTTTCTCAATTAGTTGAATTATTGTCTGGTATGGAGCATGAATGTTTGGAATTAGGCCTTTGTGTTTTGGATTCGCTGTCGTCGATACCCGAAGGCAGAGTAGCTTTGAAGGATTGTGCTAGCACCATACCTATTATGGTGAGACTTTTGATGAGGATCTCAGAAAGCTGCACTCAGTATGCATTGTCAATTTTGTGGTCTGTATGCAAGCTTGCACCGGAGGAGTGTTCGTCAATTGCCGTCGATGCAGGGCTTGCTGCAAAGCTCCTTCTTGTGATTCAAAGTGGTTGCAATCCAATATTGAAACAACAAGCTGCTGAGCTTTTGAAACTATGTAGTTTGAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACAAGAACAATCCAATGA 1386 0.3947 MNQMNSMKMNMGGLFSNPSKRDMVVGFEGGGDGQILDLDTAVKDGVLGGVDGGVVGTGVGEKLDLRKMIQELDLCEVPTVFICPISLEPMQDPVTLCTGQTYERNNILKWFNLGHFTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVHALKELHHVVAVHATARKSVIDGGGVSVLSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLIESLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSNGICPGLSLLRTVCFYKEVKILLVSIGAVSQLVELLSGMEHECLELGLCVLDSLSSIPEGRVALKDCASTIPIMVRLLMRISESCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPILKQQAAELLKLCSLNYSDTIFISKCKLTRTIQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00514 461 ProSiteProfiles U-box domain profile. 76 150 IPR003613 GO:0004842|GO:0016567
Tsu05g00514 461 CDD RING-Ubox_PUB 81 123 IPR045210 -
Tsu05g00514 461 Pfam U-box domain 77 147 IPR003613 GO:0004842|GO:0016567
Tsu05g00514 461 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 50 460 - -
Tsu05g00514 461 PANTHER WDSAM1 PROTEIN 50 460 IPR045185 GO:0061630
Tsu05g00514 461 Gene3D - 150 456 IPR011989 -
Tsu05g00514 461 SUPERFAMILY ARM repeat 165 446 IPR016024 -
Tsu05g00514 461 SUPERFAMILY RING/U-box 72 147 - -
Tsu05g00514 461 SMART Ubox_2 80 143 IPR003613 GO:0004842|GO:0016567
Tsu05g00514 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 149 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00514 Tsu-Chr5 4174998 4176933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00514 17 461 U-box Gene Family AT3G49810 73.933 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00514 - - gmx:100779827 771.541